Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5779
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    27   2.5  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   2.5  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.3  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.5  

>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 22  QASGGFEVKIQI*KVSYHSACVCSCE--NVHGALEKREMS 135
           +++G  ++ IQI +  YH+A   SCE   V G  E  E S
Sbjct: 519 ESAGAKKLNIQIFETIYHAALEASCEIAQVEGTYESYEGS 558


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 538 VKQYPNDLTHHNPHAEAPKPKPELKLEIRNPGIP 639
           V+  PND     P    P P P++K++ R P  P
Sbjct: 9   VQPPPNDSRSSTPATGPPPPIPKIKIKTREPKGP 42


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 427 SEQFELHGVCFPNRWVAGPSPNVACTSNPIDNLGIP 320
           S+Q        P+  +  PSP+++ T  P  N+G P
Sbjct: 548 SQQLNPAPTAMPHPNITSPSPSISVTQRPAVNVGPP 583


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 497 GDI*SKSSSQ-PRTA*SSTLMT*RITTLMPKRRNRNPNSSSKYETPGSPKTNEPT 658
           G I S  S Q PR   +S L   RI++  P       N +    TP SP  +  T
Sbjct: 241 GSIYSNDSFQDPRVQANSPLTIQRISSAAPSTPTSTENVNYNMTTPSSPSYSRQT 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,267
Number of Sequences: 5004
Number of extensions: 54162
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)