Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5778
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 31 1.3
09_04_0164 + 15265878-15268701,15268782-15269200 30 2.2
07_03_1113 - 24068441-24068923 30 2.2
10_08_0309 + 16666047-16666543,16666626-16666836,16666925-166670... 29 3.9
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784... 29 5.1
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 29 5.1
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726... 29 5.1
07_03_0897 - 22389116-22389600,22389611-22389728 28 6.7
07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640 28 8.9
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 28 8.9
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964... 28 8.9
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 590 IALLSSRNA---LSCSR*SLASGSPIAPTWTTSATGGVLP 700
+A+LSSR A LS S S A P P W++SA G+LP
Sbjct: 186 VAVLSSRTAVSPLSSSSSSPAHRHPRRPHWSSSAAQGLLP 225
>09_04_0164 + 15265878-15268701,15268782-15269200
Length = 1080
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 397 WFKNDSPVYEYDVESNELIDSSPTSI 474
W N + +Y DVE+N L D PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332
>07_03_1113 - 24068441-24068923
Length = 160
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 723 WGCPLTRHG--STPPVADVVHVGAIGDPDARLQREQL 619
WGC + HG S P A VH G I DA QR+ +
Sbjct: 70 WGCGGSPHGEESEAPAA-AVHAGRISSEDAAAQRQNI 105
>10_08_0309 +
16666047-16666543,16666626-16666836,16666925-16667035,
16667130-16667918
Length = 535
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 580 YNTDSATELSERAKLFPLKPRIGVSYSTYVDNIGNRGGAPVPR 708
YN D EL E A+ LK + +S+ N+G+ P+PR
Sbjct: 129 YNFDGYVELMEMARKTGLKVQAVMSFHQCGGNVGDSVNIPLPR 171
>07_03_1769 +
29377784-29377878,29377993-29378180,29378340-29378472,
29378580-29378715,29378996-29379072,29379162-29380830,
29380935-29381018,29381120-29381224,29381302-29381358
Length = 847
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 373 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 522
GSP P +H F+N++ E ++ SN +SS I ++ T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 675 HRQQGGCSRAALRDTPSPR 731
HR+ GGCSRA +R +PR
Sbjct: 38 HRRAGGCSRAPVRAEATPR 56
>01_01_0920 +
7264498-7264573,7264705-7264745,7265339-7265408,
7265500-7265648,7266143-7266238,7266326-7266396,
7266510-7266571,7266651-7266714,7267608-7267692,
7267777-7267903,7268016-7268080,7268739-7268796,
7268927-7269066,7269624-7269693,7269910-7269981,
7270188-7270234,7270468-7270566
Length = 463
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +1
Query: 298 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 426
S +GP P+ HT T ++T A S P W K+ +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397
>07_03_0897 - 22389116-22389600,22389611-22389728
Length = 200
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +2
Query: 596 LLSSRNA---LSCSR*SLASGSPIAPTWTTSATGGVLP 700
+LSSR A LS S A P P W++SA G+LP
Sbjct: 66 VLSSRTAVSLLSSSSSPFAHQQPCRPYWSSSAAQGLLP 103
>07_01_0956 + 8029297-8030285,8033204-8033330,8033350-8033640
Length = 468
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = +2
Query: 590 IALLSSRNA---LSCSR*SLASGSPIAPTWTTSATGGVLP 700
+A+LSSR A L+ S A P P W +SA G+LP
Sbjct: 64 VAVLSSRTAASQLASSSSPFAHQQPRRPHWLSSAIQGLLP 103
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 611 NALSCSR*SL-ASGSPIAPTWTTSATGGVLP 700
NA SCS SL SG PT TT + G V+P
Sbjct: 34 NAASCSGFSLHLSGDEGTPTGTTPSNGNVVP 64
>01_01_1198 -
9643469-9643585,9643740-9643805,9643905-9644489,
9645159-9645994,9646597-9646783,9647572-9647737,
9648431-9648520,9649122-9649184,9649277-9649413,
9649835-9650349,9651130-9651231,9651581-9651602
Length = 961
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Frame = +1
Query: 250 IENGVQAKSDGSHKYLSITQGPLPS-----------YAHTPGTTIELTCEAAGSPAPSVH 396
I NG+ DG +LSIT G L + H PG + +A + +V
Sbjct: 249 IRNGI-VSYDGRKLFLSITNGSLVEVTELQPLRWTYHGHPPGGDVSYISDAGNARPGTVF 307
Query: 397 WFKNDSPVYEYDVES 441
+ +YE+D ES
Sbjct: 308 TVSSTGDLYEFDRES 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,451,619
Number of Sequences: 37544
Number of extensions: 390586
Number of successful extensions: 1111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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