Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5777
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.30 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    26   4.8  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   4.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   4.8  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   8.4  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   8.4  

>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 319 RWPLACTGPARPRRSHYLQSHEVSYSK 239
           R+  + TGP R RR HYLQ +++  SK
Sbjct: 126 RYAYSQTGPLRHRRLHYLQDNKIRPSK 152


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +1

Query: 106 KDNDPQENVINFLSHLLEVTEQQQETLVPV 195
           +  D +  ++N LS LL+++E+Q++ L+ V
Sbjct: 719 EQRDRRPEIVNLLSILLDLSEEQKQKLLSV 748


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 437 SAVPQYRPQIRS**AAQ*DEPPPP 508
           SA P Y+P  R   A+  D+PPPP
Sbjct: 158 SATPIYKPNQRRIAASVPDKPPPP 181


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 145 SHLLEVTEQQQETLVPVVSASTPPRKPDEQ 234
           +HLLE     +   +P +S   PPR  D Q
Sbjct: 546 AHLLEERIHSKRANIPTISVIPPPRSMDAQ 575


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 592 TREPFDKNFCELYRKLINSTC*EWELTDFVIDKNYLKLV 708
           T   F+K +C+ ++K   S   + E+T+ +++K Y KLV
Sbjct: 351 TLSNFEK-YCDNFKKNYFSKFKDSEITEDIVEKEYWKLV 388


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
 Frame = +1

Query: 34  DTSLHSCFNSLKTAVMGCCYSICHKDNDPQENVINFLSHLLEVTEQQ------QETLVPV 195
           D +  S  +SL   +   C         PQ+ + +F++H+LE+  ++      +E  +P+
Sbjct: 180 DVTSRSVLSSLLGEMSNHCSPKIVLSLRPQDKIPDFITHVLELKNKKITYQGPKEQYIPM 239

Query: 196 VSASTP-PRKP 225
            S ST  P KP
Sbjct: 240 TSHSTNIPVKP 250


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -2

Query: 253 VSYSKQSVRLVSSVVWTLIPQVPASPVAAPLLLVDVTKS 137
           VS+ K SV  +++     +P+V + P  A LLLV  T++
Sbjct: 46  VSFKKDSVLCLTNSDLAQLPEVQSLPSWAALLLVMATEN 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,400
Number of Sequences: 5004
Number of extensions: 45627
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)