Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5777
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1146 - 28004896-28005554,28005664-28005844 34 0.10
01_06_0711 + 31388369-31388799,31388907-31389079,31389852-313899... 33 0.31
09_06_0081 + 20745627-20748144,20748211-20748308 31 0.94
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 31 1.2
06_03_1310 + 29238644-29240260 30 2.2
02_04_0055 - 19290975-19292312 30 2.2
10_08_0255 - 16243951-16244098,16244612-16244817,16245588-162465... 29 2.9
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 29 2.9
08_01_0879 - 8633063-8633080,8633221-8633399,8633581-8634238 29 5.0
03_06_0627 - 35172246-35172349,35172903-35173005,35173107-351731... 29 5.0
03_05_1072 + 30148360-30148833,30148959-30149036,30149156-301492... 29 5.0
01_05_0680 - 24238840-24241242 29 5.0
09_03_0089 + 12265916-12267232 28 6.6
09_02_0124 - 4546722-4547107,4547677-4547854,4548027-4548215,454... 28 6.6
07_03_1100 + 23961181-23962599 28 6.6
06_01_0099 + 824557-825532,826090-826245,826422-828064 28 6.6
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 28 6.6
07_01_0614 - 4545306-4545833 28 8.8
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 34.3 bits (75), Expect = 0.10
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 401 SPTSPTPSEWPYSAVPQYRPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPRAGAG 580
+PT+ TPS P A P AQ PPPP + G++ T P+ + R+GA
Sbjct: 199 APTTSTPSSPPAPAAMAPSPSTTPGGVAQ---PPPPPGTDGANA-TTPAAPAANDRSGAA 254
Query: 581 AVPP-LGSLLIRTFVNYIG 634
A P + +++ + YIG
Sbjct: 255 AAAPVVAGVVVTSLGAYIG 273
>01_06_0711 +
31388369-31388799,31388907-31389079,31389852-31389937,
31390041-31390090,31390598-31390665,31391490-31391674,
31391884-31391970,31392075-31392169,31392509-31392635
Length = 433
Score = 32.7 bits (71), Expect = 0.31
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -3
Query: 597 PSGGTAPAPALGDPEGHHQVLPVLDPELRYGGGGSSH 487
P GG +PA A D + LP+L + GGGG SH
Sbjct: 68 PPGGASPASAASDDDSEEFELPLLPSD--SGGGGGSH 102
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 31.1 bits (67), Expect = 0.94
Identities = 23/65 (35%), Positives = 29/65 (44%)
Frame = -3
Query: 663 PFLTRGIYKLPI*FTKVLIKRLPSGGTAPAPALGDPEGHHQVLPVLDPELRYGGGGSSHC 484
P +TRG L + + L APAP L P G V P D + R+G GG+S
Sbjct: 45 PTITRGPTPLLLLVVPSVPAPLVPAPPAPAPHLVVPHGGWTVSPTTDND-RFGDGGASSS 103
Query: 483 AAYQL 469
A L
Sbjct: 104 TAAPL 108
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = +2
Query: 404 PTSPTPSEWPYSAVPQYRPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPRAGAGA 583
P P P + P +P+ Q PPPP + ST + PSGS +G G
Sbjct: 56 PPPPPPPQPAKEPPPPTKPKHPKPKQQQHPPPPPPQKPPQGSTNLSLPNPSGS-GSGNGN 114
Query: 584 VPPLGSLLIRTFV 622
PP L + T +
Sbjct: 115 PPPSPQLQLSTVI 127
>06_03_1310 + 29238644-29240260
Length = 538
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/64 (34%), Positives = 25/64 (39%)
Frame = +2
Query: 410 SPTPSEWPYSAVPQYRPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPRAGAGAVP 589
SP P P P P S + PPP Y S S+ PS SP + GA P
Sbjct: 383 SPLPHHMPPRRTPPTPPPPSSPTPSHLPPPPPTYSESPKSS----MPPSTSPPSSHGASP 438
Query: 590 PLGS 601
P S
Sbjct: 439 PSSS 442
>02_04_0055 - 19290975-19292312
Length = 445
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/61 (36%), Positives = 28/61 (45%)
Frame = +2
Query: 401 SPTSPTPSEWPYSAVPQYRPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPRAGAG 580
SP P P SA P P R AA EPPPP RSS ++ + P G +A +
Sbjct: 68 SPFFPLGGHPPPSASPSSPPSFRRA-AAVVAEPPPPLRSSSGASRKL--IPFGRRKASSS 124
Query: 581 A 583
+
Sbjct: 125 S 125
>10_08_0255 -
16243951-16244098,16244612-16244817,16245588-16246500,
16246577-16246713
Length = 467
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 506 PYRSSGSSTG-RTWWCPSGSPRAGAGAVP 589
P S+ SS+G T W S S R GAGAVP
Sbjct: 434 PSNSTPSSSGAETVWPSSSSRRGGAGAVP 462
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +2
Query: 413 PTPSEWPYSAVPQYRPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPRAGAGAVP 589
PTP+ P A P P AA +P PP + + + PSGSP A A P
Sbjct: 14 PTPAPAPAPASPPPHPAASGNEAAAPPKPNPPI-TPAPARNASAAPPSGSPATAAAAAP 71
>08_01_0879 - 8633063-8633080,8633221-8633399,8633581-8634238
Length = 284
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 609 IKRLPSGGTAPAPALGDPEGHHQVLPVLDPELRYGGGG 496
+ +LPS A G HH P P L +GGGG
Sbjct: 114 LHQLPSAAAAAGAGGGGDYYHHHHQPSSSPFLMHGGGG 151
>03_06_0627 -
35172246-35172349,35172903-35173005,35173107-35173190,
35173504-35173599,35173686-35173736,35173805-35173945,
35174098-35174154,35175089-35175163,35176255-35176527,
35176608-35176667,35176754-35176846,35177196-35177348
Length = 429
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 88 CYSICHKDNDPQENVINFLSHLLEVTE 168
C ICH+D PQ ++N +H L++ +
Sbjct: 204 CVGICHRDIKPQNVLVNPHTHQLKICD 230
>03_05_1072 +
30148360-30148833,30148959-30149036,30149156-30149255,
30149371-30149501,30149604-30149855
Length = 344
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 603 RLPSGGTAPAPALGDPEGHHQVLPVLDPELRYGGGG 496
RL G TA A GD HH+++P + GGGG
Sbjct: 17 RLLRGATAKA-FHGDGSSHHRMMPSSSSSVAAGGGG 51
>01_05_0680 - 24238840-24241242
Length = 800
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -2
Query: 325 CTRWPLACTGPARPRRSHYLQSHEVSYSKQSVRLVSSVVWTLIPQVPASPVAA-PLL 158
CT + + P+ P +H+ +S + VR +SSV+ ++ P+S A PLL
Sbjct: 20 CTAAAASASQPSEPLSAHFTNGRPLSRAPAVVRDLSSVLRAILAASPSSHSRAYPLL 76
>09_03_0089 + 12265916-12267232
Length = 438
Score = 28.3 bits (60), Expect = 6.6
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 431 PYSAVPQY--RPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPRAGAGA 583
P S++P Y RP + A P PPY SS SST + PS S A A A
Sbjct: 207 PASSLPPYLLRPFAQKLPTAA--SPFPPYTSSSSSTPLSTSTPSSSNLAAANA 257
>09_02_0124 -
4546722-4547107,4547677-4547854,4548027-4548215,
4548602-4548712,4549024-4549071,4549825-4549966,
4550349-4550695
Length = 466
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 211 PPRKPDEQTALNRILHETANNVIDVGALG 297
PP PDE N+ H+T N +++ LG
Sbjct: 28 PPYVPDEAEENNQFYHQTMNEFLNMNQLG 56
>07_03_1100 + 23961181-23962599
Length = 472
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 497 PPPPYRSSGSSTGRTWWCPSGSPRAGAGAVP 589
PPPP +G G + G+ R G GA P
Sbjct: 9 PPPPLHPNGHGLGLGLYLDVGATRGGGGARP 39
>06_01_0099 + 824557-825532,826090-826245,826422-828064
Length = 924
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 401 SPTSPTPSEWPYSAVPQYRPQIRS**AAQ*DEP--PPPYRSSGSSTGRTWWCPSGSPRAG 574
SP P+ PY P PQ + A+ +P PPP+RS G T SG+P
Sbjct: 408 SPHHRAPAMAPYPLPPPSPPQQQLPPASS-SKPRRPPPHRSHGGYKNGTVSVDSGAPHDA 466
Query: 575 AG 580
G
Sbjct: 467 RG 468
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 307 ACTGPARPRRSHYLQSHEVSYSKQSVRLVSSVVWTLIPQVPASP 176
AC PA PRRS L + + + VRL + P++ ASP
Sbjct: 16 ACASPAVPRRSLLLSTAAAALQPEPVRLTRGA--SAAPKLRASP 57
>07_01_0614 - 4545306-4545833
Length = 175
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +1
Query: 433 LLSCPPIPAADKELISGAVRRAAAAISELRVEHREDLVVPFRVP 564
L S PP P A E + AV A +S L V R + P R P
Sbjct: 44 LRSSPPPPRAAAEAAASAVGGLLAPLSTLEVGLRSVNLAPLRAP 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,633,303
Number of Sequences: 37544
Number of extensions: 374446
Number of successful extensions: 1633
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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