Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5777
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    33   0.21 
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    30   1.9  
AF045646-5|AAK29828.1|  225|Caenorhabditis elegans Hypothetical ...    29   2.6  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +3

Query: 66  KNSRNGXXXXXXPQRQRPTGERYKLFVTSTRSNGAATGDAGTCGISVHTTE 218
           + S+N       PQ+ RP G  YK+     RSNG+ATG +     +++T E
Sbjct: 530 ETSKNSIKYPYVPQQSRPRGY-YKMKKLPARSNGSATGSSNDELSAIYTHE 579


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 46   HSCFNSLKTAVMGCCYSICHKDNDPQENVINFLSHLLEV 162
            H C+ +L   V      I H DN   +N IN L  LL +
Sbjct: 2027 HRCYYTLDAFVKLMALMIRHSDNGQSQNKINLLKKLLNI 2065


>AF045646-5|AAK29828.1|  225|Caenorhabditis elegans Hypothetical
           protein F56B3.3 protein.
          Length = 225

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 491 DEPPPPYRSSGSSTGRTWWCPSGSPRAGA-GAVPPLGSLLIRTFVNYIGSL*IPR 652
           + PPPP  SS SS+    +C  G P + A  A   L +LLI  F+ +  +   PR
Sbjct: 103 NSPPPPPSSSTSSSRTPGFCRKGRPTSTAQNASALLITLLICIFLKFNYNKLFPR 157


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +2

Query: 404 PTSPTPSEWPY--SAVP---QYRPQIRS**AAQ*DEPPPPYRSSGSSTGRTWWCPSGSPR 568
           PTS TPS+ P   ++VP     +P            PP P +  G   G   + P G+ R
Sbjct: 684 PTSSTPSDTPAPSTSVPPPTSVQPPQPQQPPQGPPGPPGPQQHPGPYPGYPGYGPPGAMR 743

Query: 569 AGAGAVPPLGS 601
             AG  PP G+
Sbjct: 744 PPAGFAPPPGA 754


>Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical
           protein K02E11.10 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -3

Query: 591 GGTAPAPALGDPEGHHQVLPVLDPELRYGGGG 496
           G  APAPA G   G +Q  P L   L  G GG
Sbjct: 103 GAPAPAPAFGGLGGGYQAAPALGGGLGGGLGG 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,243,066
Number of Sequences: 27780
Number of extensions: 277337
Number of successful extensions: 985
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)