Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5776
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 34 0.12
02_05_0700 + 31018480-31019832 33 0.16
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 2.0
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 29 4.6
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 29 4.6
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 28 8.0
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683... 28 8.0
01_06_0182 - 27264990-27265049,27265531-27265648,27265733-272658... 28 8.0
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +2
Query: 320 QGSPEHQDNQVN-QATQDKVDSL*SLVSQDTQVSQASRDTLDN-QDSQEHQANRVSQDNQ 493
+G+ + + +Q + Q+ QD +D + QDT + + ++ + QD +E + QD +
Sbjct: 4052 EGTDQQKADQASVQSPQDNMDQVKETEEQDTGTGETYQASVQSPQDIKEQRDETEQQDTR 4111
Query: 494 GSPEHQDKQVNQATQDK 544
+QD A QDK
Sbjct: 4112 TGEAYQDAPAPDAPQDK 4128
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 320 QGSPEHQDNQVN-QATQDKVDSL*SLVSQDTQVSQASRDTLDN-QDSQEHQANRVSQDNQ 493
+G+ + + +Q + Q+ QD + + QDT + + T+ + QD +E + QD +
Sbjct: 3638 EGTDQQKADQASVQSPQDNMGQVKETEEQDTGTGETYQATVQSPQDIKEQRDETEQQDTR 3697
Query: 494 GSPEHQDKQVNQATQDK 544
+QD A QDK
Sbjct: 3698 TGEAYQDAPAPDAPQDK 3714
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 320 QGSPEHQDNQVN-QATQDKVDSL*SLVSQDTQVSQASRDTLDN-QDSQEHQANRVSQDNQ 493
+G+ + + +Q + Q+ QD + + QDT + + ++ + QD +E + QD +
Sbjct: 3845 EGTGQQKADQASVQSPQDNMGQVKETEEQDTGTGETYQASVQSPQDIKEQRDETEQQDTR 3904
Query: 494 GSPEHQDKQVNQATQDK 544
+QD A QDK
Sbjct: 3905 TGEAYQDAPAPDAPQDK 3921
>02_05_0700 + 31018480-31019832
Length = 450
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 573 GTPRPAWTTRGRPGTPGQPRVNQDYPGTTWTPQAPPGQ 686
G P P + G+P PGQP Q PG + PPGQ
Sbjct: 53 GQPLPGQSLPGQP-LPGQPLPGQSLPGQPLVGEKPPGQ 89
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +3
Query: 573 GTPRPAWTTRGRPGTPGQPRVNQDYPGTTWTP------QAPPGQ 686
G P P + G+P PGQP V + PG P + PPGQ
Sbjct: 93 GQPLPGQSLPGQP-LPGQPLVGEKPPGQPLVPGQPLVGEKPPGQ 135
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 2.0
Identities = 23/122 (18%), Positives = 50/122 (40%)
Frame = +2
Query: 302 PEHQDNQGSPEHQDNQVNQATQDKVDSL*SLVSQDTQVSQASRDTLDNQDSQEHQANRVS 481
P+ ++ S H D+ + QD ++ + ++ ++SQ +D+ E
Sbjct: 556 PKEDNSTRSEPHNDDIQHSLEQDSIEVKDTEAAEIQEISQERTIATSKEDAVEDDGT-AE 614
Query: 482 QDNQGSPEHQDKQVNQATQDKVDNL*SLLSRDTQASLDNQGQARNTRTTQGQPGLPRNNL 661
S E QD + + + DN ++ ++D++GQ N T++ L L
Sbjct: 615 GPTCVSQEVQDVESEEVKDTEPDN---VVEASDVVTVDDEGQENNVLTSENIAELQLQGL 671
Query: 662 DT 667
++
Sbjct: 672 ES 673
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/71 (26%), Positives = 27/71 (38%)
Frame = +2
Query: 434 TLDNQDSQEHQANRVSQDNQGSPEHQDKQVNQATQDKVDNL*SLLSRDTQASLDNQGQAR 613
T+D S Q +S D+ + QD+ V Q D V+N S + +
Sbjct: 1973 TIDTVQSTRQQVQELSHDDGNNNAGQDQPVEQMRLDLVENTAGNSSTGGVEFMREEATVG 2032
Query: 614 NTRTTQGQPGL 646
N TT GL
Sbjct: 2033 NLMTTTTDAGL 2043
>04_03_0998 -
21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 416 SQASRDTLDNQDSQEHQANRVSQDNQGSPEHQDKQVNQATQDKVDNL 556
S A R + QDS +R S + + P + + Q+ QDK D L
Sbjct: 420 STAHRIVMGLQDSTAFPGSRTSLNMKNKPSYSKSNLTQSIQDKSDPL 466
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = +2
Query: 296 ASPEHQD--NQGSPEHQDNQVNQATQDKVDSL*SLVSQDTQVSQASRDTLDNQDSQEHQA 469
AS H++ + PE DN + T+ + L+ D ++++ ++ D++ S E
Sbjct: 257 ASVSHEELKPESEPEQPDNSMCAVTECMEEDTGELICLDPCIAES--ESSDSESSDEDDP 314
Query: 470 NRVSQDNQGSPEHQDKQVNQATQDKVD 550
R+S + + + D + + T K D
Sbjct: 315 GRISMSGEENCD-PDPKFTRTTSFKAD 340
>04_04_0664 -
27066253-27067155,27067242-27067508,27067707-27068368,
27068479-27069047,27070011-27070108
Length = 832
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/74 (24%), Positives = 34/74 (45%)
Frame = +2
Query: 305 EHQDNQGSPEHQDNQVNQATQDKVDSL*SLVSQDTQVSQASRDTLDNQDSQEHQANRVSQ 484
++ N G+ EH +N+ N+ + SL S D S +S D D+ S + + V
Sbjct: 310 DNDGNDGNEEHVENEENEGNKSGEGSL----SSDDDSSDSSSD--DSNSSSDEEIASVVP 363
Query: 485 DNQGSPEHQDKQVN 526
Q +P ++++
Sbjct: 364 PAQAAPSVLKRKIS 377
>01_06_0182 -
27264990-27265049,27265531-27265648,27265733-27265811,
27266816-27267116
Length = 185
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 573 GTPRPAWTTRGRPGTPGQPRVNQDYPGTTWTPQAPPGQ 686
G PR A ++ +P P QP+ Q GT P + PG+
Sbjct: 10 GKPRSA-SSGFQPSAPPQPQAQQYQYGTFGAPSSAPGE 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.308 0.130 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,353,753
Number of Sequences: 37544
Number of extensions: 167214
Number of successful extensions: 492
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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