Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5776
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    30   0.018
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.39 
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.3  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
 Frame = +2

Query: 311 QDNQGSPEHQDNQVNQATQ----DKVDSL*SLVSQDTQVSQASRDTLDNQDSQEHQANRV 478
           Q N+ +  H+ N+VN+  +    D++D +  +   DT  +    D +D  D  +      
Sbjct: 365 QSNKMNRMHRMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDRMH 424

Query: 479 SQDNQGSPEHQDKQVNQATQDK---VDNL*SLLSRDTQASLD 595
           + D   + +  DK  +    D+   VD + ++   D  +S+D
Sbjct: 425 TMDTMDTMDRTDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMD 466



 Score = 28.3 bits (60), Expect = 0.072
 Identities = 16/81 (19%), Positives = 28/81 (34%)
 Frame = +2

Query: 314 DNQGSPEHQDNQVNQATQDKVDSL*SLVSQDTQVSQASRDTLDNQDSQEHQANRVSQDNQ 493
           D     +  D        DK+ S+  +   D   +  + DT+D  D  +        D  
Sbjct: 442 DRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVDTMDTMDTMDRMDRMDRMDRMDRMDRM 501

Query: 494 GSPEHQDKQVNQATQDKVDNL 556
            + +  DK       DK+D +
Sbjct: 502 DTMDRTDKMSRIDRMDKIDRM 522


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 422 ASRDTLDNQDSQEHQANRVSQDNQGSPEHQDKQVNQATQD 541
           A     DNQ++    AN  + DNQ + +    + N   Q+
Sbjct: 427 AGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQN 466



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/48 (20%), Positives = 20/48 (41%)
 Frame = +2

Query: 398 SQDTQVSQASRDTLDNQDSQEHQANRVSQDNQGSPEHQDKQVNQATQD 541
           +Q+     A     +NQ++    AN+ + + Q      D + N   Q+
Sbjct: 429 NQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQN 476



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 305 EHQDNQGSPEHQDNQVNQATQ 367
           ++Q+NQ      DNQV+ +++
Sbjct: 522 DNQNNQNDNNRNDNQVHHSSK 542


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 402 WLTRLYRLSTLSWVAWLTWLSWCSGLPW 319
           W+  +Y +  L+W  +  ++S  S LPW
Sbjct: 72  WMN-VYYIVILAWAIFYFFMSMRSELPW 98


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 408 VSWLTRLYRLSTLSWVAWLTWLSWCSGLPW 319
           +S  T +Y +  L+W  +   +S    LPW
Sbjct: 107 LSCWTNIYYIIILAWALFYLLVSLRIDLPW 136


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 408 VSWLTRLYRLSTLSWVAWLTWLSWCSGLPW 319
           +S  T +Y +  L+W  +   +S    LPW
Sbjct: 160 LSCWTNIYYIIILAWALFYLLVSLRIDLPW 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.308    0.130    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,587
Number of Sequences: 438
Number of extensions: 1663
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)