Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5772
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase... 37 0.003
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.16
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 27 2.0
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 27 2.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 4.6
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 4.6
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 26 6.0
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.0
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 8.0
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 8.0
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 25 8.0
>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 444
Score = 36.7 bits (81), Expect = 0.003
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Frame = +1
Query: 4 RKNEFNKEFTTGS--IKCYDSNQLASNDPIEDTRCEAQCR-MTSG--LIMVVFDGHGGPA 168
R EF + T I YD NQ+ASNDP ED E R + G +FDGH G
Sbjct: 68 RLKEFERTVTVNKDGIFRYDFNQVASNDPCEDDHVEVIDRNIDEGNWYFWGIFDGHSGWN 127
Query: 169 CAQVISKRLVDYIAAAL 219
+ + + LV + L
Sbjct: 128 TSLFLRQHLVPAVVREL 144
Score = 33.9 bits (74), Expect = 0.023
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Frame = +1
Query: 397 ALEQAIIKIDQDLSKEAVEPYKLNQVINPQTLSVA-------LSGAVACVTHVDGPN--L 549
++ +A K+D + E V + N NP++L VA LSG+ A +T + L
Sbjct: 166 SISEAFAKVDHQIVHEHVS-HVFN---NPESLQVAASLLLPALSGSCALLTSYSAKSKSL 221
Query: 550 HIANVGDCNAVLGILTEDKEWIA 618
+A GD AVLG T D W A
Sbjct: 222 QVACTGDSRAVLGECTPDGSWEA 244
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 277 DTFNNRVEILQELKILYERSFRQYLAE---LANLPHEGYNVPTALEQAI--IKIDQDLSK 441
+ FNNR + +E + + ++ +E AN HE + +LE+ + I +++ L +
Sbjct: 266 ENFNNRFKEFEEREKSAIKQNKEQSSEGSKTANQTHEQKELINSLEKKVSDIALEKQLLE 325
Query: 442 EAVEPYKLNQV 474
EAVE YKL V
Sbjct: 326 EAVERYKLAMV 336
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 453 LNCFL*QILVNFYDGLFQSCW 391
LNCF IL NF+DG+ Q +
Sbjct: 473 LNCFRRYILNNFFDGMLQDSY 493
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 142 VFDGHGGPACAQVISKRL 195
+FDGHGG C++ +S L
Sbjct: 90 LFDGHGGTECSEFLSTNL 107
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 4.6
Identities = 30/110 (27%), Positives = 42/110 (38%)
Frame = +1
Query: 187 KRLVDYIAAALLPIETLHKYIQQDPREALVDTFNNRVEILQELKILYERSFRQYLAELAN 366
K L Y + LL E +H Y E ++ F +E LK ER + E
Sbjct: 1210 KYLTSYFESCLLSTEYMHIYNSVIILEKILPCFPLIIESGSALKRAAERLKDEEKREDLK 1269
Query: 367 LPHEGYNVPTALEQAIIKIDQDLSKEAVEPYKLNQVINPQTLSVALSGAV 516
+ GY + +Q S V P ++ PQ LSVA + AV
Sbjct: 1270 VLALGYFAKLSKKQPEWVSFNSFSG-TVRPSNSEKLQRPQQLSVAATSAV 1318
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 181 ISKRLVDYIAAALLPIETLHKYIQQDPREALVDTFNNRVEILQELKILYERS 336
+SK + Y +LL E ++ + ++ +V NN EI ++ L ERS
Sbjct: 935 LSKSNISYDKLSLLRDEAMNLCVNKELFSKVVGILNNAEEIKNKIATLCERS 986
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 301 FQLYY*KCQPKLLEDPAECTCAMFLWAEVRLLCNQPISLI 182
+ YY L+D E TC M L + LL ++P +++
Sbjct: 94 YDYYYTPIPSLKLKDSEENTCEMILHSSFYLLFHEPFNIL 133
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +1
Query: 286 NNRVEILQELKILYERSFRQY 348
N+++ + + K+LYE++FR Y
Sbjct: 377 NSKLVLYKNAKVLYEKAFRDY 397
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 244 YIQQDPREALVDTFNNRVEILQELKILYERSFRQYLAELANLPHEGYNVPTALEQA 411
YIQQ E FN+ + + +L ERS+ ++ + +L + T LE +
Sbjct: 1554 YIQQLLPELAASFFNSSKTYMHLVTLLKERSYLYKVSNIPSLLESAAKLSTTLEDS 1609
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 142 VFDGHGGPACAQVISKRLVDYI 207
VFDGHGG A+ + L D I
Sbjct: 61 VFDGHGGDRVAKYCRQHLPDII 82
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -2
Query: 681 LIPNSFNSSKFSELCSFGNFFRYPLFVFSQNTQNSITVANVRNM 550
LIP+ S+ E S ++++ P F+ ++T + T+A ++ +
Sbjct: 158 LIPSGPILSQIREFLSTADYYQRPFFLLIKSTLDEWTIAPLKEL 201
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 8.0
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = +1
Query: 301 ILQELKILYERSFRQYLAELANLPHEGYNVPTALEQAIIKI---DQDLSKEAVE-PYKLN 468
++ LK Y + + QY+ E L YN L + + D+S E +E + L+
Sbjct: 329 VIYALKACYRKHWVQYILEQNELGRNPYNTTNVLRAILWLVKAWTTDISPEIIENAFNLS 388
Query: 469 QVINPQTLSVALSGAVACVTH 531
V+ S S A+ + H
Sbjct: 389 GVLGLFNESAVTSRALDEMIH 409
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,657
Number of Sequences: 5004
Number of extensions: 67086
Number of successful extensions: 184
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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