Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5771
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    27   0.22 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   6.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   6.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   8.2  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.2  

>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +1

Query: 385 PVPASGPIPPEDKDVTN-----NKKKQRTASSAPKSSWLMPKDR 501
           P P    + PE K++ N     N  K+ TAS A K  W+  ++R
Sbjct: 132 PSPEWDTVTPEAKNLINQMLTVNPSKRITASEALKHPWICQRER 175


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 412 AESGQTQVPEYSSK*RPAVHLTSVASP 332
           AES  +  P++  +  P+ HL  ++SP
Sbjct: 35  AESSASNSPDHYERFSPSTHLMDLSSP 61


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 22  RQSLQLQAPNSSAPLKTASMKTTDNATSSSNVSMES 129
           + SL L    S+  L  A  +     TSSSNV+  S
Sbjct: 507 KDSLGLSTATSTCSLAVAKQQNQVPLTSSSNVNNNS 542


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 637 GASHFWLSSL*PSP 596
           G   FWLS + PSP
Sbjct: 65  GVDMFWLSPIYPSP 78


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 637 GASHFWLSSL*PSP 596
           G   FWLS + PSP
Sbjct: 65  GVDMFWLSPIYPSP 78


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 561 NGVEPRDLGCQV 596
           NG++P  LGC V
Sbjct: 211 NGIDPLPLGCPV 222


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 190 LLIFLIVGSNTRPS 149
           LL FL++ S TRPS
Sbjct: 7   LLFFLLLSSCTRPS 20


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 190 LLIFLIVGSNTRPS 149
           LL FL++ S TRPS
Sbjct: 7   LLFFLLLSSCTRPS 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.120    0.338 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,270
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)