Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5766
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.3  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    26   5.2  
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    26   6.9  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 535  LGATAALYSIYNSSVMCSFRESN*SFHYVAVKYIPKPDVSRFSSLF 672
            L  T+A +    S  +  F++ N S   ++++Y   P++SRF S F
Sbjct: 1551 LSKTSAKFGYSQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKF 1596


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 581 ITLELYIE--YSAAVAPNPTPQWKANTRPIEMNAD-SFLHN 468
           + LE Y++      + P  T QWKANT  I    D + LH+
Sbjct: 26  VFLEQYLKPCVPVLIGPKLTAQWKANTTWITSKGDPNILHS 66


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = +1

Query: 535 LGATAALYSIYNSSVMCS-------FRESN*SFHYVAVKYIPKPDVSR 657
           LG  + LYS+ +S+ + S       FRE    FH V V  IPK + S+
Sbjct: 147 LGRRSLLYSLRDSNFVLSSVGNSSDFREVEPGFHSVQVDLIPKINFSK 194


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 217 TLNNVQIEPIENTTNLFFYIK*TLIWLNL 131
           + NN+ ++P+  T N+ FY+     W +L
Sbjct: 14  SFNNINLDPLTETFNISFYLSYLNKWPSL 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,005
Number of Sequences: 5004
Number of extensions: 48256
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)