Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5766
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0319 - 23064997-23065443                                         30   1.8  
03_05_0317 - 23056409-23056855                                         30   1.8  
07_03_0347 + 17036086-17036206,17036548-17037173                       28   7.2  
02_01_0586 - 4334896-4335177,4336340-4338007                           28   7.2  
08_02_0005 + 11190901-11191896                                         28   9.5  
01_05_0148 + 18609853-18610058,18610347-18612669                       28   9.5  

>03_05_0319 - 23064997-23065443
          Length = 148

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 476 RTSLRSSRSGACSPSIAAWD*ARPRHCT 559
           R  L+  RSGACS +++AW  +R R CT
Sbjct: 16  RRWLKRRRSGACSRTLSAW--SRSRRCT 41


>03_05_0317 - 23056409-23056855
          Length = 148

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 476 RTSLRSSRSGACSPSIAAWD*ARPRHCT 559
           R  L+  RSGACS +++AW  +R R CT
Sbjct: 16  RRWLKRRRSGACSRTLSAW--SRSRRCT 41


>07_03_0347 + 17036086-17036206,17036548-17037173
          Length = 248

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 590 NEHITLELYIEYSAAVAPNPTPQWKANTRP 501
           N H+  E+ ++ +A   P P P W A+  P
Sbjct: 89  NRHVDDEVSLDLTAMAMPTPMPTWTASPLP 118


>02_01_0586 - 4334896-4335177,4336340-4338007
          Length = 649

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 596 SLNEHITLELYIEYSAAVAPNPTPQWKANTRPIEMNA-DSFLH 471
           +++ H+   L+++Y+  ++PNP+P   +   P  +NA   +LH
Sbjct: 59  AIDRHLR-SLHLKYAEPISPNPSPSPTSAAAPAALNAVKLYLH 100


>08_02_0005 + 11190901-11191896
          Length = 331

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 389 WIFKCTGAIVAFLYNQQYAYLKPKLRLI 306
           WI K T   ++  YNQ Y Y K   R+I
Sbjct: 260 WINKITRIFISKFYNQSYEYFKGAGRII 287


>01_05_0148 + 18609853-18610058,18610347-18612669
          Length = 842

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 561 RVQCRGRA*SHAAMEGEHAPDRDERRLV---LTQRIWQSISVAH 439
           R +C G A        EH  DRDERRLV   L + I Q IS AH
Sbjct: 426 RRECFGVAYDEDNRRWEHE-DRDERRLVVHKLNKDIDQEISCAH 468


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,413,185
Number of Sequences: 37544
Number of extensions: 255515
Number of successful extensions: 467
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)