Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5766
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    28   6.4  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   6.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   6.4  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 572  ELYIEYSAAVAPNPTPQWKANTRPIEMNADSFL 474
            EL ++     +P PT  WK N + IE   D +L
Sbjct: 4249 ELSVKVGVIASPEPTLFWKHNGKSIEEGGDYYL 4281


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 572  ELYIEYSAAVAPNPTPQWKANTRPIEMNADSFL 474
            EL ++     +P PT  WK N + IE   D +L
Sbjct: 4249 ELSVKVGVIASPEPTLFWKHNGKSIEEGGDYYL 4281


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 572  ELYIEYSAAVAPNPTPQWKANTRPIEMNADSFL 474
            EL ++     +P PT  WK N + IE   D +L
Sbjct: 4249 ELSVKVGVIASPEPTLFWKHNGKSIEEGGDYYL 4281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,612,497
Number of Sequences: 27780
Number of extensions: 261773
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)