Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5763
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...   208   4e-55
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...   208   5e-55
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    27   2.9  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   2.9  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   2.9  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    27   2.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    25   9.0  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   9.0  

>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  208 bits (509), Expect = 4e-55
 Identities = 92/150 (61%), Positives = 120/150 (80%)
 Frame = +1

Query: 88  MGDIEDTHFETGDFLASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 267
           M + E   FE G+  AS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 268 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDIXDDGYLTLMADNGDLREDLKIPDG 447
           V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G
Sbjct: 61  VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119

Query: 448 DLGTQLRTDFDSGKELLCTVLKSCGEECVI 537
           +LG ++   FD G++L+ TV+ + GEE  +
Sbjct: 120 ELGNEIEEGFDEGRDLIITVVSAMGEETAL 149


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score =  208 bits (508), Expect = 5e-55
 Identities = 92/150 (61%), Positives = 120/150 (80%)
 Frame = +1

Query: 88  MGDIEDTHFETGDFLASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 267
           M + E   FE G+  AS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1   MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60

Query: 268 VGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDIXDDGYLTLMADNGDLREDLKIPDG 447
           V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM  +G  ++D+++P+G
Sbjct: 61  VALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEG 119

Query: 448 DLGTQLRTDFDSGKELLCTVLKSCGEECVI 537
           +LG ++   F+ GK+L+ TV+ + GEE  +
Sbjct: 120 ELGNEIEEGFEEGKDLIITVVSAMGEEIAL 149


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 148 PMQCSALRKNGFVMLKGRPCKIVEMSTSKTGK-HGHAKVHLVGIDIFNGKKY 300
           P +CS  ++     ++   C  V       G+ H     H++G+D+ NG  Y
Sbjct: 35  PRRCSTCKRINKRSIRCLSCHSVGCLWGHHGEEHAMEHTHMIGVDVKNGHTY 86


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 241 KHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDY 360
           K   A   L+  D F+G ++  IC S  N+ +  V  ED+
Sbjct: 878 KEADAYAPLLAYDKFDGDEFACICESMKNVKLDFVTLEDW 917


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 232 KTGKHGHAKVHLVGIDIFNGK-KYEDICPSTHNMDVPHVKRED 357
           K G+H  A  +++  +  N   K +D CPST   D+ H+ R D
Sbjct: 164 KIGQHLSAMGYVIPKEWTNTMVKLQDRCPSTSLKDIDHLFRVD 206


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 180 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 275
           + + E   +Q C N+  +N +A  R SS GWD
Sbjct: 41  YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 325  NMDVPHVKREDYQLTDIXDDGYL 393
            NM +P+++ E  Q+ D   D YL
Sbjct: 968  NMSIPYIRGEYVQMIDANQDNYL 990


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536  ITHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 423
            +  S+P   STV N+S P++ S  +   +P + S +L SS
Sbjct: 1254 LNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSS 1293



 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536  ITHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 423
            +  S+P   STV N+S P++ S  V    P + S +L SS
Sbjct: 1422 VNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSSVLNSS 1461



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536  ITHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 423
            +  S+P   STV N+S P++ S  + +  P + S +L SS
Sbjct: 1374 VNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 1413



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536  ITHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 423
            +  S+P   STV N+S P++ S  +    P + S +L SS
Sbjct: 1734 VNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1773



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536  ITHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 423
            +  S+P   STV N+S P++ S  + +  P + S +L SS
Sbjct: 2214 VNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2253



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536  ITHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 423
            +  S+P   STV N+S P++ S  + +  P + S +L SS
Sbjct: 2502 VNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2541



 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -3

Query: 536  ITHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 423
            +  S+P   STV N+S P++ S  + +  P + S +L SS
Sbjct: 2802 VNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2841


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 324 VCGGTDIFILFTIEDINPNQVNFSVAVLSG 235
           +CG T +FI    E+I+P  V     VL G
Sbjct: 219 LCGATALFIACKYEEIHPPTVKDLEIVLEG 248


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 112 FETGDFLASATFPMQCSALRKNGFVMLK 195
           FETG++   + F   C   +KN F   K
Sbjct: 344 FETGNYYTLSNFEKYCDNFKKNYFSKFK 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,870
Number of Sequences: 5004
Number of extensions: 56121
Number of successful extensions: 236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)