Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5763
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.3  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   5.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   5.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   5.6  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   9.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.8  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 277 DIFNGKKYEDIC 312
           D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 242 FPVLDVDISTILHGR 198
           FPVL V I+ +LHG+
Sbjct: 8   FPVLFVIINVLLHGQ 22


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 221 CPHPKPESTATLKFTWLGLISSMVKSM 301
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 221 CPHPKPESTATLKFTWLGLISSMVKSM 301
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 221 CPHPKPESTATLKFTWLGLISSMVKSM 301
           CP   P        TWLG ++S +  +
Sbjct: 353 CPDCCPSDRMVYFITWLGYVNSALNPL 379


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 168 QGRTLHGEGG 139
           QGRTL+G GG
Sbjct: 94  QGRTLYGFGG 103


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 298 YEDICPSTHNMDV 336
           YE   PSTH MD+
Sbjct: 46  YERFSPSTHLMDL 58


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 277 DIFNGKKYEDICPSTH 324
           +I NGKK  +I   TH
Sbjct: 44  EIINGKKLTEIINETH 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,156
Number of Sequences: 438
Number of extensions: 4423
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)