Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5760
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   1.6  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    27   2.7  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   4.8  
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    26   4.8  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 428  WFVLLKL--FYIMSIRWMYFGVFVF 496
            WF+  +L  +Y++SI W+++ V +F
Sbjct: 2034 WFMFARLPSYYVLSIPWLFYAVALF 2058


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 530 SNSNKASKSNLRTRRLQNTSTVYSLYRIISATRTTTLPVKFPIIPFEMASYS 375
           S S K  +S++ TR  + T T Y L    S    + +  KF   PF   + S
Sbjct: 235 SPSGKVKRSDIATRIYKKTDTTYMLKLQASRKVYSEIQTKFGPFPFSTRNIS 286


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 315  WQIIIATPFFICGAFMASFYCL 250
            W+I++ T  F+ GA++  FY L
Sbjct: 1191 WKIVVMTVSFLVGAWLIIFYVL 1212


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 376 HTLGCKSRAESL*SKNCKNDVANYYCDSFFYLWSFYGQLLLFRALK 239
           +TLG      SL ++  K D   +YC +F     FY   L++R L+
Sbjct: 193 NTLGITRHTLSLINRRSKQDKIIFYCGAFLVFVLFY---LIYRWLR 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,637
Number of Sequences: 5004
Number of extensions: 63404
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)