Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5760
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391...    29   2.9  
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    29   2.9  
03_01_0259 - 1996427-1998772                                           29   3.8  
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789...    28   6.6  
10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419...    28   8.7  
04_04_0402 + 24948451-24948559,24948862-24949115                       28   8.7  

>07_03_1305 -
           25638531-25638584,25638909-25638990,25639087-25639169,
           25639252-25639515,25639984-25640060,25640183-25640277,
           25640953-25641065
          Length = 255

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = -3

Query: 680 RTKNKSAMIVTVLFSPCCPLYIGSGMFKKSLSPHTVRL*NELLFTQHADMSNSNKASKSN 501
           R  +K+ M++ VL  PC   +I SG  + +L PH V + N     + +D S +    + +
Sbjct: 70  RVYDKADMMLNVLL-PCQKDFISSGAEEHTLPPHEVPVENS-SSEKSSDNSVAEVVPEKD 127

Query: 500 LRTRRLQNTSTV 465
             T   Q+T++V
Sbjct: 128 AETPAAQDTTSV 139


>05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,
            2643625-2643730,2643770-2644349,2645780-2645871,
            2645969-2646035,2646126-2646231,2646628-2646708,
            2646789-2647058,2647158-2648788,2648834-2649385,
            2650602-2651324,2651451-2651526
          Length = 1486

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 27/76 (35%), Positives = 40/76 (52%)
 Frame = -3

Query: 686  VLRTKNKSAMIVTVLFSPCCPLYIGSGMFKKSLSPHTVRL*NELLFTQHADMSNSNKASK 507
            VL+T +KSA  ++ +FSP  P    S    +SLS  +V    ELL T   D + SN   K
Sbjct: 913  VLKTPSKSANELSPIFSPLNP----SKSSSRSLSKPSVG--RELL-TLDPDSNPSNCQHK 965

Query: 506  SNLRTRRLQNTSTVYS 459
             + R ++  N S ++S
Sbjct: 966  DSRRKKKNTNFSILFS 981


>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -3

Query: 542 HADMSNSNKAS---KSNLRTRRLQNTS-TVYSLYRIISATRTTTLPVKFPI 402
           + DMS+S   +    SN+ +R+++ T  T    Y +  ATRTTT+P K  +
Sbjct: 665 NGDMSHSQSRTIHEVSNILSRKIEETDDTRNQSYPVPVATRTTTMPNKHSV 715


>10_08_0075 -
           14676835-14677173,14677776-14678426,14678734-14678948,
           14679510-14679783,14680249-14680410
          Length = 546

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 625 GQQGLNKTVTIIADLFFVLRTKNHMLINSF 714
           GQ+ LN  + I  + +F L+ KN  +IN F
Sbjct: 393 GQEYLNDCLVIFIERYFFLQVKNEDIINHF 422


>10_08_0356 +
           17141107-17141165,17141502-17141650,17141748-17141969,
           17142051-17142187,17142319-17142570,17143915-17144063,
           17144476-17144540,17144633-17144701,17145014-17145144,
           17145218-17145505,17145669-17145811,17145898-17145951,
           17146000-17146080,17149048-17149222,17149223-17149647,
           17149929-17150144,17150279-17150309
          Length = 881

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 310 LPRHFCNSYFITTLPCSCILM 372
           +P  +C+ YF    PC CIL+
Sbjct: 595 VPEPYCSIYFFLYSPCDCILV 615


>04_04_0402 + 24948451-24948559,24948862-24949115
          Length = 120

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 322 NDVANYYCDSFFYLWSFYGQLLLFRALKYCI 230
           NDV N   D  FY    YGQLL     K C+
Sbjct: 82  NDVNNGCADEMFYTIHTYGQLLPGTIFKKCL 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,238,064
Number of Sequences: 37544
Number of extensions: 389190
Number of successful extensions: 725
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)