Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5758
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 274 6e-75
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 148 8e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 132 3e-32
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 106 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 85 9e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 83 3e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 76 4e-15
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 34 0.016
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.037
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.11
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.34
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 29 0.60
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.2
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb... 26 4.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.8
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 25 9.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 9.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 274 bits (673), Expect = 6e-75
Identities = 122/133 (91%), Positives = 128/133 (96%)
Frame = +2
Query: 101 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 280
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 461 IMFETFNTPAMYV 499
I+FETFN PA YV
Sbjct: 122 IIFETFNAPAFYV 134
Score = 62.5 bits (145), Expect = 5e-11
Identities = 30/35 (85%), Positives = 31/35 (88%)
Frame = +3
Query: 486 PPCTFAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 590
P AIQAVLSLYASGRTTGIVLDSGDGV+HTVP
Sbjct: 130 PAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVP 164
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 589 PIYEGYALPPRHPAF-WT*PGRDLTD 663
PIYEGYALP H GRDLTD
Sbjct: 164 PIYEGYALP--HAIMRLDLAGRDLTD 187
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 148 bits (358), Expect = 8e-37
Identities = 69/142 (48%), Positives = 95/142 (66%), Gaps = 2/142 (1%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 299 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 475
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 476 FNTPAM-YVRHPSRALAVRVRS 538
N PA+ + P AL R+
Sbjct: 132 LNVPALSFSLQPVLALYASART 153
Score = 52.8 bits (121), Expect = 4e-08
Identities = 22/35 (62%), Positives = 30/35 (85%)
Frame = +3
Query: 486 PPCTFAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 590
P +F++Q VL+LYAS RTTGIVL+ GDG++H+VP
Sbjct: 135 PALSFSLQPVLALYASARTTGIVLECGDGLTHSVP 169
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 132 bits (320), Expect = 3e-32
Identities = 61/133 (45%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
Frame = +2
Query: 107 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 280
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 281 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 460
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 461 IMFETFNTPAMYV 499
MFE + +YV
Sbjct: 122 TMFERYGFGGVYV 134
Score = 50.4 bits (115), Expect = 2e-07
Identities = 22/30 (73%), Positives = 27/30 (90%)
Frame = +3
Query: 501 AIQAVLSLYASGRTTGIVLDSGDGVSHTVP 590
AIQAVLSLYA G ++G+V+DSGDGV+H VP
Sbjct: 135 AIQAVLSLYAQGLSSGVVVDSGDGVTHIVP 164
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 106 bits (255), Expect = 2e-24
Identities = 58/151 (38%), Positives = 81/151 (53%), Gaps = 24/151 (15%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 247
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 248 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 406
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 407 LLTEAPLNPKANREKMTQIMFETFNTPAMYV 499
LLTE PLNP NRE +IMFE+FN +Y+
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYI 157
Score = 33.5 bits (73), Expect = 0.028
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 8/38 (21%)
Frame = +3
Query: 501 AIQAVLSLYASGRT--------TGIVLDSGDGVSHTVP 590
A+QAVL+L AS + TG V+DSGDGV+H +P
Sbjct: 158 AVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIP 195
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 85.0 bits (201), Expect = 9e-18
Identities = 47/132 (35%), Positives = 71/132 (53%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 283
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 284 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 463
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 464 MFETFNTPAMYV 499
MFE+ PA Y+
Sbjct: 121 MFESLRCPATYL 132
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 83.4 bits (197), Expect = 3e-17
Identities = 42/126 (33%), Positives = 75/126 (59%), Gaps = 1/126 (0%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 299 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 475
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 476 FNTPAM 493
+N P++
Sbjct: 142 YNAPSV 147
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +3
Query: 486 PPCTFAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPHL 596
P + I + S Y + + ++GIVL+ G+ SH +P L
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVL 183
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 76.2 bits (179), Expect = 4e-15
Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 283
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 284 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 457
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 458 QIMFETFNTPAMYV 499
+ FE + PA Y+
Sbjct: 122 EAAFEQLHVPAFYL 135
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 34.3 bits (75), Expect = 0.016
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 298
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 299 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 466
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 467 FETFNTPA 490
FE F A
Sbjct: 118 FEEFQFDA 125
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 33.1 bits (72), Expect = 0.037
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 305 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 472
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 473 TFNTPAMYVRH 505
P + +
Sbjct: 172 ECQVPGFTIAY 182
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 486 PPCTFAIQAVLSLYASGRTTGIVLDSG 566
P T A + ++ LYA G G+V+D G
Sbjct: 176 PGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 365 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTP 487
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTP 1441
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 164 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 307
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.34
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 261 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 100
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 29.1 bits (62), Expect = 0.60
Identities = 20/44 (45%), Positives = 21/44 (47%)
Frame = -1
Query: 659 VRSRPG*VQNAGWRGGSAYPS*MGHGVGNTVAGVQHDTGGTTGR 528
VR R VQ G RGG Y S G G G+TV GG GR
Sbjct: 118 VRGRGQNVQRGG-RGGR-YGSSGGRGAGDTVVSRSSGAGGARGR 159
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 272 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 183
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -2
Query: 301 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 122
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 264 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 148
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 407 LLTEAPLNPKANREKMTQIMFETFN 481
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 567 DGVSHTVPHLRRIRTPPTPSCVLDLTRSRPHRL 665
D VS+ PH + PP+P V+D R R +R+
Sbjct: 115 DQVSYLSPHTKLAVRPPSPKMVVDSIR-RAYRV 146
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 301 FEGQDTSFALCLISYIRVLLSHTDHHA 221
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.0 bits (52), Expect = 9.8
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Frame = +1
Query: 439 QQREDDPDHVRNIQHARHVRSP----SKPCSRCTRPVVPPVSCWTPATVFPTPCPIYEGY 606
++ ED D +R+ + A + + P + P V P S P PTP P
Sbjct: 1655 EEEEDSEDDIRSSKDAAALAAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSV 1714
Query: 607 ALPPRHP 627
PP P
Sbjct: 1715 PPPPSAP 1721
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 477 STRPPCTFAIQAVLSLYASGRTTG 548
S + PCTF I++ L + ASG G
Sbjct: 153 SVKVPCTFKIRSKLPVIASGIPCG 176
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 424 PQPQGQQREDDPDHVRNIQHARHVRSPSKPCSRCTRP 534
P GQ+ ++ Q ++H R PSK S + P
Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSP 524
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 490 HVRSPSKPCSRCTRPVVPPVSCWTPATVFPTPCP 591
++ S KP S+ TRP +P + T +V P P P
Sbjct: 59 NIASFQKPSSKATRPYIPSYTRLT-YSVPPLPIP 91
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 224 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 310
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,162
Number of Sequences: 5004
Number of extensions: 70208
Number of successful extensions: 215
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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