Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5754
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0018 - 13826587-13827695,13827907-13827966,13828332-138283...    29   3.9  
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262...    29   3.9  

>09_04_0018 -
           13826587-13827695,13827907-13827966,13828332-13828368,
           13830281-13830341,13831295-13831443
          Length = 471

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 251 ISTHLLTIFSLFFSSGDINVSNSCGAGIAPFDSFTILQR*SIDFPV 114
           +   L TI    F +GD N   SCG  +   +   +LQ  S D PV
Sbjct: 364 VKAFLRTISPRHFVNGDWNTGGSCGNTVPLSNGSEVLQDHSSDLPV 409


>02_01_0365 +
           2621302-2621711,2622442-2622620,2623381-2623496,
           2623626-2623964,2624113-2624307,2624505-2624594,
           2625288-2625518,2625632-2625952
          Length = 626

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 121 KSIDQRCKMVNESNGAIPAPQELETFISPDEKNKE 225
           K +D++ K +N      P PQ+ ET +SP +K KE
Sbjct: 491 KGLDKKPKSINSP----PRPQDNETCLSPTDKTKE 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,249
Number of Sequences: 37544
Number of extensions: 310236
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)