Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5753
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.2  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    26   6.2  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    26   6.2  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -2

Query: 483 FFLHITIVFFLNDNFFVFTRVCMFVIYRGFRWYLMVKVNIYWSRLSWHSISSETL 319
           F+ H+    FL+  FF FT   +F+IYR  R+Y++ +  +  S L  +  SS T+
Sbjct: 139 FYAHV----FLSWLFFGFT---IFIIYRELRYYVIFRHAMQSSGLYNNLPSSSTM 186


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 483  FFLHITIVFFLNDNFFVFTRVC 418
            F  + T  FFL D+F  F RVC
Sbjct: 2525 FIKYTTSSFFLTDDFVRFIRVC 2546


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 295 LKWPLLYFKFP*CKQRDNVVVNVLW 221
           +KWPL+ FK P   +R  VV    W
Sbjct: 671 IKWPLVRFKLPNGGERTIVVQRETW 695


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -1

Query: 232 NVLWYTHSQTNNQSILIYHIR 170
           +VLWY  S+ ++ S ++YH++
Sbjct: 152 SVLWYLQSELSDVSSVLYHLQ 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,696
Number of Sequences: 5004
Number of extensions: 53490
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)