Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5749
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    26   3.4  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   5.9  
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces...    25   7.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   7.7  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   7.7  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    25   7.7  

>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 17  RLLTNIRL*TARHPSVSLSLPLAADTNACNSTMSTQTATL 136
           +L+ N+R+  AR  S+++ LP+  + NA  S ++ +  T+
Sbjct: 216 QLIPNLRISGARIHSITIDLPIKLNGNAVFSEITYKDGTI 255


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 92  TNACNSTMSTQTATLRMCISTSWILT*CLTDNHLIAP 202
           T   +S  STQT TLR+ IS    +T  LT+     P
Sbjct: 47  TPVVSSVTSTQTDTLRVTISEVVSVTATLTETFTATP 83


>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 250 LTASSC-YYTGAIASRLRRAQGEFIVRAGQREVLKLHVTP 366
           L A  C + + A  S LRR  G  ++RAG R  +  H  P
Sbjct: 7   LAAKHCPFVSKADPSALRRMAGAGLIRAGARCPVVRHALP 46


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 238  IWCVLTASSCYYTGAIASRLRRAQGEFIVRA-GQREVLKLHVT 363
            IW  L+   C+  G+I SRL +  G       G RE + L +T
Sbjct: 1736 IWNKLSYIDCFSIGSIPSRLAKFVGNTAFTGFGVREAIPLLLT 1778


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +1

Query: 376 MDKLVDHSMVKVHAMAYVKQTRQAWSDEDDLPLHKPRMQVPGEKPDLRRSRMRHHLQFTE 555
           ++ +VDHS+++V+    +     A+  + D PL    ++VP     L +S M+  L    
Sbjct: 448 IEAVVDHSIIEVYLQGGIMCLTNAYYFKGDEPLQYYYLRVP-TGASLAKSGMQPLLN-NR 505

Query: 556 PH 561
           PH
Sbjct: 506 PH 507


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 367 EESHEASIPLAVQLGR*THPAPFADAKRSRQCSSMKML 254
           E  HE S  L +Q+G      P  DA  + +CS +  L
Sbjct: 84  EVDHEPSGYLKLQIGSLVLGGPHTDAALAMECSRLNQL 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,422
Number of Sequences: 5004
Number of extensions: 47602
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)