Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5749
(568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099... 31 0.85
02_01_0784 + 5843029-5843427,5843699-5844532 29 2.6
11_01_0025 + 173253-173424,173534-173781,174307-174400,174467-17... 28 4.5
01_05_0586 + 23443371-23444645 28 4.5
08_02_0929 + 22694917-22695072,22695399-22695781,22698637-226987... 28 6.0
07_03_1372 + 26104857-26104968,26105055-26105428,26105598-261056... 28 6.0
03_06_0042 + 31247084-31247641,31248396-31248482,31248684-312487... 28 6.0
01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908... 28 6.0
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 7.9
>10_08_0262 +
16307003-16308416,16309501-16309595,16309954-16309959,
16310567-16310671
Length = 539
Score = 30.7 bits (66), Expect = 0.85
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Frame = -1
Query: 310 PAPFADAKRSRQCSSMKMLLEHTRWYGLR-----EICSECSWCNQMVVRKA 173
P PF + R R+C +K L H RW + S WC V A
Sbjct: 308 PDPFLEWLRRRECKDLKRTLVHGRWKATTWRMPIPVTSWDDWCRDCAVESA 358
>02_01_0784 + 5843029-5843427,5843699-5844532
Length = 410
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 373 YMDKLVDHSM-VKVHAMAYVKQTRQAWSDEDDLPLHKPRMQVPGEKP--DLRRSRMRHHL 543
Y+ +L+ S+ +KVHA + RQ W D + + K + PG+ P LR ++ H L
Sbjct: 99 YLVRLLGSSLELKVHASNL--RIRQLWEDGKWVAIPKDSARFPGDSPRSQLRCGKVGHEL 156
Query: 544 QFT 552
T
Sbjct: 157 VHT 159
>11_01_0025 +
173253-173424,173534-173781,174307-174400,174467-174709,
176174-176412,176496-176691,176870-177192
Length = 504
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 43 DSSSPERFAIIASCRGYQRLQQYYEYPDRNFEDVYFDLMDIDIVPYGQPFDCTMNIQ 213
++ S E II RG++ L Y +P R+F+ F M VP + DC +Q
Sbjct: 27 ETPSEEGHEIIRFRRGWESL---YSHPHRSFDATTFAPMRYTHVPIPKYADCNYGLQ 80
>01_05_0586 + 23443371-23444645
Length = 424
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 247 VLTASSCYYTGAIASRLRRAQG 312
VL + CYYTG + R RA G
Sbjct: 74 VLVGAVCYYTGTLIERCMRADG 95
>08_02_0929 +
22694917-22695072,22695399-22695781,22698637-22698769,
22698870-22699312,22699786-22699864
Length = 397
Score = 27.9 bits (59), Expect = 6.0
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Frame = +1
Query: 178 YGQPFDC--TMNIQNKSHEDRTIWCVLTASSCYYTGAIAS--RLRRAQGEFIVRAGQREV 345
YGQP N+ N H + C T CY + +AS +L G +
Sbjct: 257 YGQPDSLGHQHNLGN-GHRQQHHHCY-TGHQCYGSVGLASTPKLSSISGAKTETSSMDAS 314
Query: 346 LKLHVTPQEYMDKLVDHSMVKVHAMAYVKQTRQAWSDEDDLPLHKPRMQVPGEKPDLRRS 525
++ +P+E VD S +++ + W +ED+ ++ +PG +LRR
Sbjct: 315 MRSSSSPEE-----VDRSRELSVSVSNASDQEREWVEEDEPGVYITIRALPGGIRELRRV 369
Query: 526 RMRHHLQFTEPH 561
R +F+E H
Sbjct: 370 RFSRE-KFSEMH 380
>07_03_1372 +
26104857-26104968,26105055-26105428,26105598-26105696,
26107160-26107222,26107546-26107815,26108158-26108278,
26108386-26108522,26108614-26108727,26108799-26108998,
26109094-26109285,26109378-26109543
Length = 615
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -2
Query: 138 LKVAVWVLIVLLQALVSAARGNDSETLG*RAV 43
L+VAVWV +V+ LV A N + +LG +A+
Sbjct: 92 LQVAVWVCMVMSVMLVVEATFNSAVSLGVKAI 123
>03_06_0042 +
31247084-31247641,31248396-31248482,31248684-31248779,
31248897-31248998,31249455-31249541,31249692-31249759,
31249879-31249963
Length = 360
Score = 27.9 bits (59), Expect = 6.0
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +1
Query: 235 TIWCVLTASSCYYTGAIASRLRRAQGEFIVRAGQREVLKLHVTPQEYMDKLVDHSMVKVH 414
TI C++ A+ + + R+ + + AG + +L + QEY + H+ V
Sbjct: 171 TIICLMAATPLHRHAKVV-RMVVSTYQAASGAGAAAMEELKLQTQEYAFNIFSHNAPIVE 229
Query: 415 ------AMAYVKQTRQAWSDED 462
M VK+TR+ W+D+D
Sbjct: 230 NGYNEEEMKMVKETRKIWNDKD 251
>01_07_0008 +
40389744-40389896,40389967-40390048,40390693-40390808,
40391107-40391195,40391859-40391904,40392248-40392716,
40392825-40392952,40393182-40393253,40393512-40393885,
40394005-40394545,40394653-40394952,40395167-40395268
Length = 823
Score = 27.9 bits (59), Expect = 6.0
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -1
Query: 268 SMKMLLEHTRWYGLREICSECSWCNQ 191
S M++ +W+ +RE+ E S+C++
Sbjct: 333 SASMIVTENQWFNIREVSPEWSYCSE 358
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 349 SIPLAVQLGR*THPAPFADAKRSRQCSSMKML 254
S PLA +GR HPAP A A + +S+ L
Sbjct: 487 SPPLARHIGRRLHPAPLAVASNRKTPASLGQL 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,357,941
Number of Sequences: 37544
Number of extensions: 349856
Number of successful extensions: 828
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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