Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5749
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ...    34   0.062
U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical pr...    34   0.082
U42843-7|AAA83598.2|  326|Caenorhabditis elegans Serpentine rece...    30   1.3  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U80842-12|AAB37942.1|  139|Caenorhabditis elegans Hypothetical p...    28   5.4  
U42833-5|AAA83580.1|  444|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
           related protein 10 protein.
          Length = 1382

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +1

Query: 316 FIVRAGQREVLKLHVTPQEYMDKLVDHSMVKVHAMAYVKQTRQAWSDEDDLP 471
           + V + ++E LKL V  ++  ++L D+   KVH+M  VKQ   +  D+DDLP
Sbjct: 745 YSVNSMEKEKLKLPVMSKKKSERL-DYKYSKVHSMD-VKQHTDSMHDDDDLP 794


>U64837-3|AAB04837.1|  782|Caenorhabditis elegans Hypothetical
           protein T27E4.6 protein.
          Length = 782

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 463 HLHQTKPVEFVLHKPWHAPSPWSDLLVYPCIL 368
           H+H  K VE +L KPW+  +P+   ++  CIL
Sbjct: 531 HVHDDKLVEIILSKPWNQMAPYMMGMIAGCIL 562


>U42843-7|AAA83598.2|  326|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 5 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 204 HGAIKWLSVRHYVNIHEVEIHILKVAVWVLIV 109
           +G  +WL+ R   N++ V +H+    +W+L++
Sbjct: 75  YGPCQWLTDRTCFNLYSVLVHVYTHTIWLLLI 106


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical protein
            F57C7.4 protein.
          Length = 1484

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = +2

Query: 59   SVSLSLPLAADTNACNSTMSTQTATLRMCISTSWILT*CLTDNHLIAP*TFRTNLTKTVP 238
            +++ S   A+  ++ N    T +    +C+ T+WI    L DN  +A   F + +  +V 
Sbjct: 1062 NITFSSYFASSYSSWNCGSGTSSTCRYVCLGTAWISNQALGDNSYLAEALFLSYIQLSVN 1121

Query: 239  SGVF*QHLHATTL 277
              V    LH  +L
Sbjct: 1122 KSV--SDLHQLSL 1132


>U80842-12|AAB37942.1|  139|Caenorhabditis elegans Hypothetical
           protein ZC239.3 protein.
          Length = 139

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 265 MKMLLEHTRWYGLREICSEC 206
           +KMLL+   +Y L E+C +C
Sbjct: 77  LKMLLDEAEYYELTELCDDC 96


>U42833-5|AAA83580.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK430.7 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 4/135 (2%)
 Frame = +1

Query: 106 QYYEYPDRNFEDVYFDLMDIDIVPYGQPFDCT-MNIQNKSHEDRTIWCVLTASSCYYTGA 282
           +Y E+P ++ +     ++D+D  P GQ F     +   +  + R     +T+   YYT  
Sbjct: 266 RYMEHPVQSHQGFTSAVLDVDYSPTGQEFVAAGYDRSIRLFKARD----MTSRDVYYTKR 321

Query: 283 IASRLR---RAQGEFIVRAGQREVLKLHVTPQEYMDKLVDHSMVKVHAMAYVKQTRQAWS 453
           +AS L     A  +F++ +G  E + + V      +KL   +  +  A AY ++ R  + 
Sbjct: 322 MASVLSVLWSADSKFVL-SGSNE-MNIRVWKANAAEKLGPLTKREKQAFAYNEKLRDTYK 379

Query: 454 DEDDLPLHKPRMQVP 498
           +  ++        VP
Sbjct: 380 NHPEVRRIAKHRNVP 394


>U58749-2|AAK18876.1|  355|Caenorhabditis elegans Hypothetical
           protein B0496.5 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -2

Query: 234 TVFVR-FVLNVHGAIKWLSVRHYVNIHE---VEIHILKVAVWVLIVLLQAL 94
           T+F+R F+  +   +  L +      HE   ++ HI++V+ W+ +++ Q L
Sbjct: 224 TIFIRCFLSGLSVHVPLLVIARTTEGHELIAIKDHIIRVSYWIFVIIFQPL 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,402
Number of Sequences: 27780
Number of extensions: 284013
Number of successful extensions: 779
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)