Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5747
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0668 - 24147412-24147618,24148019-24148286,24149506-241497... 52 3e-07
05_05_0081 + 22248963-22249016,22249120-22249165,22249259-222493... 50 2e-06
06_01_0135 + 1039018-1041474 31 0.90
07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936 29 4.8
03_05_0603 - 26046145-26046273,26046400-26046459,26046820-260468... 28 6.3
02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941 28 6.3
06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050 28 8.4
06_02_0197 - 12912818-12913411,12913505-12913732 28 8.4
06_02_0167 + 12529281-12529597,12530358-12530475 28 8.4
01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539 28 8.4
>01_05_0668 -
24147412-24147618,24148019-24148286,24149506-24149728,
24149822-24149996
Length = 290
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +3
Query: 30 TTLPDGQDEIETQTSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVS 209
T +P G I S ++ L+CLYGYSL I+IP ++ + I +W+ +A F+S
Sbjct: 185 TFVPLGLYVILKYFSAPAGLVQLWCLYGYSLFIFIPASLLSIVPIEIFRWVIAGVAGFMS 244
Query: 210 GAVLIFWLLPALKKS-KYFYMLVGSILAFHFLLATGFMLYFF 332
+ L + S + ++++V I LA LYFF
Sbjct: 245 ATFVAMNLRAHIVNSGERWFLIVAGIFLLQLGLAVLLKLYFF 286
>05_05_0081 +
22248963-22249016,22249120-22249165,22249259-22249357,
22250178-22250337,22250858-22251128,22251295-22251486
Length = 273
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/84 (27%), Positives = 44/84 (52%)
Frame = +3
Query: 81 PSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
PS++ +C++GYSL I+IP ++ I + +L+W+ +++ S + I L +
Sbjct: 190 PSLVRFWCMWGYSLFIFIPASVLLLIPVEFLRWVIIILVGGAS-SWFISLNLKECTEGAD 248
Query: 261 FYMLVGSILAFHFLLATGFMLYFF 332
+L+ S F LA ++FF
Sbjct: 249 MMVLIASAAVLQFTLALFIKVFFF 272
>06_01_0135 + 1039018-1041474
Length = 818
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = +2
Query: 191 DGCLCLRSSPHILAAASFEEIKV----FLYACRIYS----CFSFLVGNWFYVILLS 334
D +CL + H AAA F I LY IY F FL+ NWF V LLS
Sbjct: 409 DTTMCLLLTAHHSAAAFFATINFAVTFLLYIIYIYEEVWELFVFLLSNWFAVSLLS 464
>07_01_0751 - 5777017-5778032,5779718-5780111,5780830-5781936
Length = 838
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 12 WGVLKWTTLPDGQDEIETQTSNSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVL 191
WG L W +P + T+T+ +S L+ + ++ F ++ S ++F
Sbjct: 397 WGPLGWL-IPSETFPLATRTTGFSFAVSSNMLFTFLIA-----QAFLSMMCSMKAFIFFF 450
Query: 192 MAAF-VSGAVLIFWLLPALK 248
A + V A +FWLLP K
Sbjct: 451 FAIWIVIMAAFVFWLLPETK 470
>03_05_0603 -
26046145-26046273,26046400-26046459,26046820-26046895,
26046988-26047109,26047286-26047360,26047466-26047536,
26048102-26048129,26048625-26048738
Length = 224
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 180 LFVLMAAFVSGAVLIFWLLPALKKSKYFYMLVGSILAFHFLLATG 314
L V + F++ +IFWL P+L +Y S++A + + +G
Sbjct: 70 LGVSVGYFIADLAMIFWLYPSLGGMEYIVHHTLSLVAIAYTMLSG 114
>02_01_0396 + 2874932-2875240,2875401-2875532,2875678-2875941
Length = 234
Score = 28.3 bits (60), Expect = 6.3
Identities = 25/84 (29%), Positives = 40/84 (47%)
Frame = +3
Query: 75 NSPSMISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKS 254
+SPS+++L LY L+++ P T S +F+ A+FV+GAV+ PA
Sbjct: 20 HSPSLVTL--LYSPLLNLFTPPPATTTTLYSG-DIMFINTASFVAGAVVASPEQPAKLVR 76
Query: 255 KYFYMLVGSILAFHFLLATGFMLY 326
++ GS A + GF Y
Sbjct: 77 DQRRVVPGSCRARRGAASNGFRTY 100
>06_03_1357 + 29543922-29545058,29545632-29545784,29545904-29546050
Length = 478
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 481 GSGLALPLALLKSMGDGNHSPSGGPYARLPTRAIKKLNKNV 603
GS LA L LL M PSG YARL RA+ + + +
Sbjct: 64 GSDLASSLRLLADMQAAGLRPSGAAYARL-IRALARAGRTL 103
>06_02_0197 - 12912818-12913411,12913505-12913732
Length = 273
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 94 LSSVYMAIRFPFTSLWLYSGPFRSLGSS 177
LS +AI P WLYSG + +LG S
Sbjct: 4 LSDEALAIVVPIVVYWLYSGLYMALGHS 31
>06_02_0167 + 12529281-12529597,12530358-12530475
Length = 144
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 171 LQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
L W +LMA V A+ +W +P + ++Y
Sbjct: 78 LAWRIILMAGAVPAALTYYWRMPMPETARY 107
>01_01_0773 + 6002563-6003069,6003183-6003299,6003447-6003539
Length = 238
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 463 STLIAVGSGLALPLALLKSMGDGNHSPSGGPYARLPTRAIKKLNKNVLTYSMTKANKLTK 642
+T + VG+G+AL LAL G + GG + + + NV+T S ++A
Sbjct: 72 TTALKVGAGVALALAL----GGASWRARGGSAGPVLMQPAAVCSLNVVTDSASRATAERS 127
Query: 643 SFALSLMTTSL 675
+ A + M TS+
Sbjct: 128 AAAAATMRTSV 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,316,297
Number of Sequences: 37544
Number of extensions: 409557
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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