Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5747
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    75   4e-14
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    75   4e-14
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    75   4e-14
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    28   7.5  

>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 190 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 249

Query: 270 LVG---SILAFHFLLATGFMLYFF 332
             G   S++  HFLLA  F +YFF
Sbjct: 250 AFGTVISVVVLHFLLAFTFKVYFF 273


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 180 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 239

Query: 270 LVG---SILAFHFLLATGFMLYFF 332
             G   S++  HFLLA  F +YFF
Sbjct: 240 AFGTVISVVVLHFLLAFTFKVYFF 263


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 75.4 bits (177), Expect = 4e-14
 Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
 Frame = +3

Query: 90  ISLFCLYGYSLSIYIPVAIFWTIQISWLQWLFVLMAAFVSGAVLIFWLLPALKKSKYFYM 269
           + L CLYGYSL+I+IPV++ W + I W +W  +  +  +SG VL   + PA++      +
Sbjct: 180 VDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMI 239

Query: 270 LVG---SILAFHFLLATGFMLYFF 332
             G   S++  HFLLA  F +YFF
Sbjct: 240 AFGTVISVVVLHFLLAFTFKVYFF 263


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 138 VAIFWTIQISWLQWLFVLMAAFVSGAV--LIFWLLPALKKSKYFYMLVGSILAFHFLLAT 311
           V + +T+ ++ L + ++L++   +  +  L FWL+ A         L+  +++F  +LAT
Sbjct: 51  VDVVYTLNLTTLMFYYLLISLSANFIIKNLTFWLVWASTSIGSMRSLLALLISFERVLAT 110

Query: 312 GFMLYF 329
            F +YF
Sbjct: 111 YFPIYF 116


>U23510-2|AAC46787.1|  250|Caenorhabditis elegans Hypothetical
           protein R12C12.9a protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 WLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           WL +L  A++SG +L+F  LP   K  +
Sbjct: 205 WLDILFIAYISGHILVFLSLPFFNKKLF 232


>U23510-1|AAN60495.1|  245|Caenorhabditis elegans Hypothetical
           protein R12C12.9b protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 177 WLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           WL +L  A++SG +L+F  LP   K  +
Sbjct: 200 WLDILFIAYISGHILVFLSLPFFNKKLF 227


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +3

Query: 165 SWLQWLFVLMAAFVSGAVLIFWLLPALKKSKY 260
           +W +W++++ A  + G+V++FWL    +KS +
Sbjct: 461 NW-RWIWLVFAVLLIGSVILFWLTFQFEKSDW 491


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 568 ADEHTAHLMVSGYRRPWTSAMPGAEPSR-CLPLSMYLIKNIIIHYV 434
           AD +   ++V G   PW    PG +  + C P  +  ++   + YV
Sbjct: 768 ADTNNHRVVVCGPPHPWKIGRPGTDDGQLCFPRKVIALRGEAVRYV 813


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,437,542
Number of Sequences: 27780
Number of extensions: 353887
Number of successful extensions: 1205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)