Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5747
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   1.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 239 WQQPEYEDCSGDKGSHQ 189
           W   +YEDCSG   +H+
Sbjct: 115 WSFAKYEDCSGIVSAHK 131


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 692 TDFLFNRLVVIKDNAKDF 639
           +D L+NRLVV +D ++ F
Sbjct: 572 SDVLYNRLVVSEDGSETF 589


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 692 TDFLFNRLVVIKDNAKDF 639
           +D L+NRLVV +D ++ F
Sbjct: 572 SDVLYNRLVVSEDGSETF 589


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 551 PPDGEWLPSPMDFSNARG 498
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -2

Query: 284 NRSDKHIKIL*FLQSWQQPEYEDCSG 207
           N+  K   +L     W   +YEDCSG
Sbjct: 101 NKKGKGGPLLRPYPDWSFAKYEDCSG 126


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = +3

Query: 126 IYIPVAIFWTIQISWL--QWLFVLMAAF-VSGAVLIFWLLPALKKSKYFYML 272
           + +P+ I W I +SW     +  +MA F + G  L  ++L  +   +Y+ ++
Sbjct: 90  LMMPLEIGWAITVSWKAGDVMCRIMAFFRMFGLYLSSFVLVCISMDRYYAVI 141


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 220 SYSGCCQL*RNQSIFICLSDLFLLFISCWQLVLCYTSF 333
           S+ GCC   R           FLLFI   Q+ +   +F
Sbjct: 66  SFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAF 103


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 575 LVGRRAYGPPDGEWLP 528
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,151
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)