Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5746
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 74 1e-13
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 74 1e-13
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 64 1e-10
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 59 3e-09
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 48 5e-06
10_02_0119 + 5488469-5488647,5489030-5489195 32 0.33
12_02_0783 + 23125786-23126037,23126867-23127784 31 0.76
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 31 1.0
03_02_0091 + 5574528-5577254 30 1.8
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 30 1.8
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 29 2.3
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 29 2.3
07_03_1216 + 24940426-24940714,24940800-24940877,24941954-249421... 28 5.4
02_05_0525 + 29764176-29764518,29765351-29765679 28 5.4
07_03_0768 + 21368058-21368624 28 7.1
01_05_0674 - 24187820-24188713,24188809-24189204 28 7.1
10_08_0412 - 17729765-17730283,17731256-17731726 27 9.4
07_01_0087 + 676501-677907 27 9.4
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 27 9.4
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 73.7 bits (173), Expect = 1e-13
Identities = 51/165 (30%), Positives = 78/165 (47%)
Frame = +1
Query: 73 AHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINTQPLKYLEDRQLISDRQYGFRHGR 252
A++ I K G + YRPI++ + K++ +++ T+ L+ + R + D Q GF GR
Sbjct: 971 AYIVLIQKPGKENTVDGYRPISLQNCSVKILSKVLATR-LQRVFLRMIHLD-QTGFLKGR 1028
Query: 253 SAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIA 432
+ L+Y T K + + V LD KAFD V +L L G PE WI
Sbjct: 1029 CISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIK 1088
Query: 433 SFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDML 567
L V+++G + G+ QG LS LFIL + D+L
Sbjct: 1089 GLLSSSKSAVLLNGVPGRWICCKKGLLQGDPLSSYLFIL-VADVL 1132
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 73.7 bits (173), Expect = 1e-13
Identities = 43/154 (27%), Positives = 76/154 (49%)
Frame = +1
Query: 88 IPKKGDRSDPSSYRPIAITSLLSKVMERIINTQPLKYLEDRQLISDRQYGFRHGRSAGDL 267
+PKK + +RPI++ + K++ +++ + + +L+SD YGF G++ D
Sbjct: 376 VPKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVI--LKLVSDNHYGFIKGKTIQDC 433
Query: 268 LVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDG 447
+ + +SK E + + LD KAFD + H A+LS + G P +W+
Sbjct: 434 PAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFST 493
Query: 448 RSITVVVDGDCSDTMTINAGVPQGSVLSPTLFIL 549
S V+++G ++ GV QG LS LF+L
Sbjct: 494 ASSAVLLNGVPGNSFKCRRGVRQGVPLSLLLFVL 527
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 63.7 bits (148), Expect = 1e-10
Identities = 40/113 (35%), Positives = 54/113 (47%)
Frame = +1
Query: 229 QYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIP 408
Q GF GR + L+Y T K + L + LD AKAFD V ++L L G P
Sbjct: 6 QTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFP 65
Query: 409 EGLCKWIASFLDGRSITVVVDGDCSDTMTINAGVPQGSVLSPTLFILYINDML 567
+ WI + L V++ G +T G+ QG LSP LFIL + D+L
Sbjct: 66 DNWISWIKNLLQTSKSAVLLHGIPGKWITCKKGLRQGDPLSPYLFIL-VADVL 117
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 2/146 (1%)
Frame = +1
Query: 118 SSYRPIAITSLLSKVMERIINTQPLKYLEDRQLISDRQYGFRHGRSAGD--LLVYLTHRW 291
S +RPI++ ++L K+ +++ + +L D ++S+ Q F GR D L+ Y
Sbjct: 185 SKFRPISLCNVLYKIASKVLANRLKLFLPD--IVSEFQSAFVPGRLITDSSLVAYECLNT 242
Query: 292 AEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVD 471
+ +K A+ +D+ KA+DR+ L L G + + + + ++
Sbjct: 243 IKKQSNKKPFFALKIDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRIN 302
Query: 472 GDCSDTMTINAGVPQGSVLSPTLFIL 549
G+ +DT+ + G+ QG +SP LF+L
Sbjct: 303 GELTDTVVPSRGIRQGDPISPYLFLL 328
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 48.4 bits (110), Expect = 5e-06
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Frame = +1
Query: 88 IPKKGDRSDPSSYRPIAITSLLSKVMERIINTQPLKYLEDRQLISDRQYGFRHGRSAGD- 264
IPKK D YRPI++ +++ KV+ + + + L+D L+S Q F GR D
Sbjct: 955 IPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDD--LVSKEQSAFIQGRMITDN 1012
Query: 265 -LLVY-LTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYG 402
LL + H + ++ A A LD++KA+DRV R L L G
Sbjct: 1013 ALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLG 1060
>10_02_0119 + 5488469-5488647,5489030-5489195
Length = 114
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = -3
Query: 249 TVTKTVLSVTDQLAILKILQGLCIYYSLHHLGKQGSYRDRPIARRVRPVTLLGDRVDVGG 70
T T T L + D + + L + + L H G + YRD P ARR+ LGD V+ GG
Sbjct: 28 TTTSTQLPI-DVVVGGPLAASLNMDHELGHYGPRDRYRDPPSARRIEE---LGDSVEHGG 83
>12_02_0783 + 23125786-23126037,23126867-23127784
Length = 389
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 35 LIALTG--FRLHGRPP-TSTLSPRRVTGRTRR 121
L+A TG +RL G PP T T PRR TG RR
Sbjct: 158 LLAATGQSWRLRGSPPPTPTPPPRRATGERRR 189
>08_02_0104 + 12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/95 (20%), Positives = 38/95 (40%)
Frame = +1
Query: 307 SKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSD 486
S E + ++ D +H + + G+ + L W A +G + +V D +CS
Sbjct: 886 SNSEDMLSPAELPFMIDLDYHTQIEYRWGGEGLRKTLICWAAEKSEGGQVVLVEDEECSS 945
Query: 487 TMTINAGVPQGSVLSPTLFILYINDMLSIDGMHCY 591
T I+ V + P + + + I + C+
Sbjct: 946 TYCISFRVKNAEAVPP---VKELRKTMRIQALRCH 977
>03_02_0091 + 5574528-5577254
Length = 908
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +1
Query: 301 LESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDC 480
L++ G+ AV K D + HR L LP G P+ + I L S +++DG
Sbjct: 212 LDAPGDCAAVG----KMQDAMAHRLGLCALPDGGAPDHRARPIFEVLRDSSFLLLLDGVT 267
Query: 481 SDTMTINAGVP 513
++ GVP
Sbjct: 268 KPVDLVDIGVP 278
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 29.9 bits (64), Expect = 1.8
Identities = 30/82 (36%), Positives = 37/82 (45%)
Frame = +1
Query: 325 AVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSDTMTINA 504
A+ LD++KA+DRV L L G + KW S C D I
Sbjct: 235 ALKLDLSKAYDRVDWAFLDGVLQRMGFGDTWRKWTMS--------------CVDICPIR- 279
Query: 505 GVPQGSVLSPTLFILYINDMLS 570
G+ QG LSP LF L+I D LS
Sbjct: 280 GLRQGDPLSPYLF-LFIADGLS 300
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +1
Query: 328 VSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVVVDGD----CSDTMT 495
+S+ + R ++LL+ S+ +P WIA+ +D S +VVD D +
Sbjct: 151 LSVHDKEVIGRTCFKSLLNFQSSF-VPNQFASWIANHVDVSSSDIVVDDKVIPLTEDCVH 209
Query: 496 INAGVPQGSVLSPTLFILYINDMLSIDG 579
I G+P G + + F L N +L G
Sbjct: 210 IILGLPVGGIEISSNFELGKNKILETFG 237
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 385 KLPSYGIPEGLCKWIASFLDGRSITVVVDGDCSD 486
KLP + +C W A +L G+S + +VD +
Sbjct: 563 KLPEADDQKSMCNWAAEYLKGKSYSKLVDASLKE 596
>07_03_1216 +
24940426-24940714,24940800-24940877,24941954-24942129,
24942298-24942492
Length = 245
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 186 LCIYYSLHHLGKQGSYRDRPIARRV 112
LC+YY+L H+G GS R+ +A +
Sbjct: 74 LCLYYALLHIGLAGSPRNPFLAHEI 98
>02_05_0525 + 29764176-29764518,29765351-29765679
Length = 223
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 292 AEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRSITVV 465
AE + +G AV+ D+ A R RA L+ G E +C+W+A L+ R + +V
Sbjct: 55 AEGVARRGYR-AVTFDMRGA-GRSTGRASLTGSTEVGDVEAVCRWVADNLNPRGVLLV 110
>07_03_0768 + 21368058-21368624
Length = 188
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -1
Query: 587 QCMPSIDSMSLIYRMKSVGESTEPCGTPALMVMVSEQSPSTTTVMLRPSKKLAIHLQS-P 411
+C P++ S++L YR++ T + L + S P + ++H +
Sbjct: 44 RCAPAVASLALYYRIREASPPTPFTFSLLLAALASSSFPPLPHPQALRASPTSMHSSAMR 103
Query: 410 SGIP*DGSFDRSALCQTLSKAFAI 339
S P DG+ + + +C + A A+
Sbjct: 104 SRTPPDGAMEIAEVCDDCACARAM 127
>01_05_0674 - 24187820-24188713,24188809-24189204
Length = 429
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = -2
Query: 367 ARPCRRPSRYQGSQQEPRPCSPRLQPTCE*GIQEDRQLSDRDENRT 230
A P P Q + +P P P LQP C+ I+E+R +D D+ RT
Sbjct: 284 AAPRSPPGDAQVAANQPPP--PPLQPQCQPHIKEER--ADDDDVRT 325
>10_08_0412 - 17729765-17730283,17731256-17731726
Length = 329
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 349 PSRYQGSQQEPRPCSPRLQPTCE 281
PSRY+ ++Q+ + C+P TC+
Sbjct: 244 PSRYEINKQQVQQCTPSFTATCD 266
>07_01_0087 + 676501-677907
Length = 468
Score = 27.5 bits (58), Expect = 9.4
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 12/117 (10%)
Frame = +1
Query: 136 AITSLLSKVMERIINTQPLKYLEDRQLISDRQYGFRHGRSA-GDLLVYLTHRWAEA--LE 306
A+T +SK++ R N +E L D F G D +VY T L+
Sbjct: 241 AMTPAMSKILARYDNLHLHPQIE--HLREDGTVVFVDGTCVVADAVVYCTGNTYSYPFLD 298
Query: 307 SKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIP---------EGLCKWIASFLDGR 450
+ G+ + FD V+ AL L GIP E +W+A L GR
Sbjct: 299 TDGKVTVDDNRVGPLFDHVFPPALAPSLSFVGIPAMVVVPLFNEVQARWVAQVLSGR 355
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 142 TSLLSKVMERIINTQPLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALES 309
T L+++ +E ++ YL D L+ ++ HG+ A L+ T R A+ALE+
Sbjct: 461 TDLIAQRVEFVLEADKRSYLMD--LLHAQKANGTHGKQALTLVFVETKRGADALEN 514
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,836,636
Number of Sequences: 37544
Number of extensions: 466260
Number of successful extensions: 1401
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -