Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5744
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.67 
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    26   4.7  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.7  

>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 376 HKIRNS*CSGSTNARARR*YRASQNLQLWRYQFFGFGCGFLTP 248
           H   N+  SGS   RAR+  R   N   W  + FG   G+ TP
Sbjct: 230 HSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYNTP 272


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 363 FLILCFIAGFFLTLWDVNNANKTF*NSFFFKLGS 464
           F+I  F    F T W  +N N  +   F F++G+
Sbjct: 308 FVITAFSKNIFRTKWLRHNLNPVYNEKFLFEVGA 341


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 287 VPIFWFRMRFPNTQVYYYIFLLNLLEKRSHEQAIK*LIRQDSILFIVEV 141
           VP+     R P+T V Y I  +NLL K    +A   ++    +L ++ +
Sbjct: 72  VPVLKSWYRVPSTGVEYAIQCVNLLYKHGWREAHNEMLTMQLLLMLLNI 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,962
Number of Sequences: 5004
Number of extensions: 58714
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)