Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5744
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0238 - 19711579-19712145,19712188-19712370                       29   3.7  
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801...    29   4.9  

>01_05_0238 - 19711579-19712145,19712188-19712370
          Length = 249

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = -3

Query: 692 KNYGRGIYCKALCPIGRRYRTV*IHYTILTILTHKWNTLKVDFQNLMDILGVRRPLPKTK 513
           K   +  Y   L P  +R++   IH  ++ + T + +T     + L DIL  +RPLP T+
Sbjct: 39  KTVSQEYYDTRLLPFPKRFKKPSIHIHVMLLDTMQVSTYA---RYLKDILNNKRPLPTTE 95

Query: 512 TDDSTND 492
               T +
Sbjct: 96  VVKLTEE 102


>01_07_0054 -
           40779336-40779599,40779734-40779848,40779998-40780181,
           40780322-40780393,40780485-40780611,40780830-40781011,
           40781099-40781249
          Length = 364

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
 Frame = +3

Query: 396 LTLWDVNNANKTF*NSFFFKLGSIFFRPIVKGVIS--TIVCLRFRKRSPNTQYIHKI 560
           +TL ++++A + F N     +G   F  + KG++   TIV ++ R   P+ ++IH++
Sbjct: 58  MTLEELSSATRNFSNVNL--IGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEV 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,246,532
Number of Sequences: 37544
Number of extensions: 337347
Number of successful extensions: 698
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)