Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5743
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   5.9  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.8  

>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 322 CYIVMHRILRSKCIVSDSKYQLQG 251
           CY V H  LR KC+V     +++G
Sbjct: 5   CYAVYHPALRLKCLVRKGLGKIKG 28


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 16  RVLCCSEYLRNFLKGFTY*IVTID*KVSQKFFTHILKCCS 135
           ++  C+EY+R   K F Y I+     VS     H + CC+
Sbjct: 47  KIALCNEYIRFLAKCFLY-ILRCMSTVSLLSSAHKMNCCN 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,541
Number of Sequences: 5004
Number of extensions: 44991
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)