Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5743
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965 32 0.37
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495 31 0.65
06_01_0133 + 1027765-1028430 29 2.0
08_01_0395 - 3502750-3503033,3504844-3505663 29 3.4
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 29 3.4
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 28 4.6
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081... 28 4.6
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967... 28 6.0
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 28 6.0
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 6.0
07_03_1507 - 27228032-27228742 28 6.0
06_03_0516 + 21661696-21662490 28 6.0
04_03_0951 - 21085461-21085596,21086363-21086421 27 8.0
>11_08_0027 + 27775552-27775770,27776437-27778483,27778589-27778965
Length = 880
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 536 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATQCVITDTNNRH 402
P G+F+N L L +S LC + +GFP Q + NN H
Sbjct: 487 PEGGVFANIT---LQYLVGNSGLCGAARLGFPPCQTTSPNRNNGH 528
>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
Length = 1086
Score = 31.1 bits (67), Expect = 0.65
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 536 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATQCVITDTNNR 405
P G+FSN L L +S LC V+ +G P+ Q + N R
Sbjct: 701 PKGGVFSNIT---LQSLVGNSGLCGVARLGLPSCQTTSSKRNGR 741
>06_01_0133 + 1027765-1028430
Length = 221
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 299 LEIQMHRVRLQVPVTGAQSTWVHSIPKNTHSKLVASLLL 183
+++QM+R LQ P+ G +++V + + + ASLLL
Sbjct: 113 MQLQMYRAPLQTPLPGNGTSYVPAAAATQRASIKASLLL 151
>08_01_0395 - 3502750-3503033,3504844-3505663
Length = 367
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 395 TPTLCRAARRGVGPAMTGSRLTTTLLHCDAPHLEIQMHR 279
TP +A PA T + TT L H D HL +Q R
Sbjct: 293 TPDSKQAVVSAKAPAETAAASTTVLPHADVYHLGVQAQR 331
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 522 VQQLLGTRTGTPD--GGQRPLQRLTHRFPGHAVRYH 421
V+Q++GT G D GG P + T FPG +R H
Sbjct: 880 VEQVMGTGGGWQDQIGGLYPGIKCTQSFPGQPLRLH 915
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 536 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATQCVITDTNNRH 402
PS G+FSN L L ++ LC +GFPA T +H
Sbjct: 648 PSGGVFSNIT---LQSLMGNARLCGAQHLGFPACLEKSHSTRRKH 689
>11_08_0032 -
27807489-27807497,27807641-27807684,27808046-27808168,
27810770-27810983,27811382-27811530,27811719-27812618,
27812964-27814659
Length = 1044
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 536 PSSGMFSNFLAPGLGPLTADSALCSVSLIGFPATQCVITDTNNRH 402
PS G+FSN + L ++ LC +GFPA T +H
Sbjct: 593 PSGGIFSNIT---MQSLMGNAGLCGAPRLGFPACLEKSDSTRTKH 634
>10_06_0018 -
9674771-9674995,9675079-9675126,9675471-9675530,
9675693-9675758,9675844-9675906,9675985-9676032,
9676150-9676215,9676493-9676558,9676660-9676725,
9676822-9676887,9676975-9677058,9677310-9677654,
9677738-9677833,9678129-9678332,9678434-9678726,
9678833-9678958,9679217-9679226
Length = 643
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 294 DPNASCPTP-STSYRGTIHLGSQHS*KHSLKTSC 196
D N PT ST Y+ T LG HS K TSC
Sbjct: 394 DENLQPPTKHSTVYKNTQSLGQNHSGKQRKITSC 427
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 294 DPNASCPTP-STSYRGTIHLGSQHS*KHSLKTSC 196
D N PT ST Y+ T LG HS K TSC
Sbjct: 459 DENLQPPTKHSTVYKNTQSLGQNHSGKQRKITSC 492
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 456 THRFPGHAVRYH*HEQQTFHYTNTVP 379
TH H+ ++H H+ Q+ H + +VP
Sbjct: 848 THEGSSHSKKHHEHDSQSLHKSKSVP 873
>07_03_1507 - 27228032-27228742
Length = 236
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 496 WDP*RRTAPSAASHSSVSRPRSA 428
WDP RR P+A S S+V R A
Sbjct: 196 WDPQRRPPPAACSRSTVDRGADA 218
>06_03_0516 + 21661696-21662490
Length = 264
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 351 GRSYAPARGPAQCWC 395
GRS+ P G A CWC
Sbjct: 238 GRSWKPGTGTAPCWC 252
>04_03_0951 - 21085461-21085596,21086363-21086421
Length = 64
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = -2
Query: 441 GHAVRYH*HEQQTFHYTNTVPGRAPGRRTG-HDGVSF 334
G R + HEQ H T PG G HDGV F
Sbjct: 8 GRPTRLNLHEQSWTHQIGTAKDTKPGPLDGIHDGVLF 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,232,576
Number of Sequences: 37544
Number of extensions: 340016
Number of successful extensions: 1048
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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