Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5741
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    28   0.39 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    28   0.51 
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   2.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   2.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   3.6  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   4.8  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   4.8  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   4.8  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   4.8  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    24   6.3  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    24   6.3  
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    24   8.3  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 329 VSRDIRTTTEARRPGTARNTRRPK 258
           V+R +RT+T  RRP T    R+PK
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPK 44


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -1

Query: 329 VSRDIRTTTEARRPGTARNTRRPK 258
           V++ +RT+T  RRP T + +R+PK
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPK 44


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 337 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*ALAAGSAQR 218
           A+P    +G  + PGA+ Q  T   R  +   +++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 315 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 217
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 302 EARRPGTARNTRRPKPTELSACCRERSETPRHRN 201
           EA  PG  RNTR+    ++S     ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = +2

Query: 17  AIPLRPNGLRR----NFSPKLFSRLNYVSP-SMTMLIQQLN 124
           A+ +R  G R+    NF PK+ + L + SP ++++LIQ  N
Sbjct: 227 ALVMRAGGSRQVSAHNFWPKISASLGFPSPDAISLLIQYYN 267


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 227 RSETPRHRNKPSRPVWSRRSPHH 159
           R +  R  N P  P W+ R+ HH
Sbjct: 885 REQYERSLNLPMGPEWTTRASHH 907


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 86  VSPSMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGD 211
           VSP++  L+   NCS S +   +  GV S   K  + ++ GD
Sbjct: 53  VSPTLERLVAPFNCSPSSTPLQDVAGVGS---KMSDTLWMGD 91


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 293 RPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 168
           RP  + +      TE+SA     SE  R++ K SR  +SR S
Sbjct: 174 RPANSTSVPNAVNTEISAARATESEASRNQTKASRD-YSRAS 214


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 287 GTARNTRRPKPTELSACCRERSETPRHRNKPSRPV 183
           GTA + R   P   SA  + +S TP   N  + PV
Sbjct: 188 GTALSQRETLPNMGSAQMKSQSRTPSFSNVTTSPV 222


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 168 TPSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 347
           TPS P  S   +P    + A+P        + T S       P + G P V A G+  PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 108 NIVILGET*LSLENNLGEKLRRKP 37
           N+V+LGE  L  E +  ++LRR P
Sbjct: 76  NVVLLGELDLDKEYDAVKQLRRMP 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,503,297
Number of Sequences: 5004
Number of extensions: 27424
Number of successful extensions: 113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)