Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5741
(362 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical p... 30 0.43
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 30 0.57
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 29 0.75
U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell l... 29 0.75
U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell l... 29 0.75
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ... 28 1.7
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 3.0
AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical ... 27 3.0
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 27 5.3
U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 27 5.3
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 26 7.0
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 26 7.0
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 26 7.0
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical pr... 26 9.3
Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical pr... 26 9.3
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 26 9.3
U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical pr... 26 9.3
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 26 9.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 26 9.3
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 26 9.3
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 26 9.3
>Z75547-12|CAN99725.1| 141|Caenorhabditis elegans Hypothetical
protein K10C8.3b protein.
Length = 141
Score = 30.3 bits (65), Expect = 0.43
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -1
Query: 335 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 159
R S+ ++ + +RP + R ++ P P R RS + + K + V P+H
Sbjct: 17 RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.9 bits (64), Expect = 0.57
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -2
Query: 346 PGGAEP*AGTSGPPQRPGAQAQ 281
PGG P G SGPP RPGA Q
Sbjct: 204 PGGDAP-PGPSGPPGRPGAPGQ 224
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 29.5 bits (63), Expect = 0.75
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -2
Query: 322 GTSGPPQRPGAQAQRETLGVRS 257
GT+GP +RP AQ +R++ G+R+
Sbjct: 38 GTAGPSRRPTAQPRRQSGGIRT 59
>U80838-2|AAL02517.1| 297|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform a protein.
Length = 297
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 361 RRVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 248
R T GGA P +GT+ PP P + L +R Q+
Sbjct: 260 RGATSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 297
>U80838-1|AAU05570.1| 597|Caenorhabditis elegans Abnormal cell
lineage protein 42,isoform b protein.
Length = 597
Score = 29.5 bits (63), Expect = 0.75
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 361 RRVTPPGGAEP*AGTSGPPQRPGAQAQRETLGVRSRQS 248
R T GGA P +GT+ PP P + L +R Q+
Sbjct: 560 RGATSTGGASPTSGTNSPPVFPKTSSSSSLLMLRDSQN 597
>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
protein Y47D3B.7 protein.
Length = 1113
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 318 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 154
+ HH+ P P H H + + E++ ++ DAP T T LV +S P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 306 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 202
H GP E+H +E D E LL G L D P +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291
>AC084156-1|AAK68491.2| 466|Caenorhabditis elegans Hypothetical
protein Y46E12BL.4 protein.
Length = 466
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = -3
Query: 351 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDA 214
PLR S Q H H R P HS + R E P AL+ A
Sbjct: 309 PLRPPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRTES--PAALKAA 352
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 311 TTTEARRPGTARNTRRPKPTELSACCRERSETP 213
TTT +RP T T P+P E +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194
>Z81124-1|CAB03369.1| 312|Caenorhabditis elegans Hypothetical
protein T21B4.2 protein.
Length = 312
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 349 PPGGAEP*AGTSGPPQRPG 293
PPG A P AG +GPP PG
Sbjct: 170 PPGPAGP-AGNAGPPGAPG 187
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -2
Query: 352 TPPGGAEP*AGTSGPPQRPGAQAQ 281
TP GGA G GPP PG Q
Sbjct: 195 TPSGGAAGPPGPPGPPGGPGNDGQ 218
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 329 VSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSET 216
V +++RT+ RRP T R P+ SA R++ ++
Sbjct: 26 VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDS 63
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 335 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPS 192
RA SR ARR + ++ P P A R +S R R PS
Sbjct: 333 RAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS 380
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
protein F54F3.1 protein.
Length = 1584
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 357 ESPLRAVQSREQGHQDHHRGPAPRHSEKHS 268
E P R Q++EQ HQ HH+ P+ + S
Sbjct: 323 EEPAR--QAQEQHHQQHHQPDQPQQQPQRS 350
>U67953-4|AAL13329.1| 732|Caenorhabditis elegans Hypothetical
protein ZC13.3 protein.
Length = 732
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 293 RPGTARNTRRPKPTEL 246
RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 357 ESPLRAVQSREQGHQDHH-RGPAPRHSEKHSASEAD 253
+SP+ +V E+G++DHH P H A D
Sbjct: 531 QSPVLSVHGGEEGYEDHHDEAPVLSVHTDHKAHSED 566
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical
protein T13F2.3b protein.
Length = 1076
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 352 TPPGGAEP*AGTSGPPQRP 296
T PG A P G G PQRP
Sbjct: 293 TTPGSAGPGTGPPGTPQRP 311
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical
protein T13F2.3a protein.
Length = 1074
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 352 TPPGGAEP*AGTSGPPQRP 296
T PG A P G G PQRP
Sbjct: 291 TTPGSAGPGTGPPGTPQRP 309
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 332 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 240
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 332 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 240
+ S + T++ ARRP TA+ PT +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 318 HQDHHRGPAPRHSEKHSASEADRAE 244
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>Z78065-1|CAD54154.1| 547|Caenorhabditis elegans Hypothetical
protein T09E8.1d protein.
Length = 547
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -3
Query: 336 QSREQGHQDHHRGPAPRH-SEKHSASE 259
Q+ H HH PAPRH S H E
Sbjct: 31 QNGNSHHHHHHLPPAPRHLSSSHHQIE 57
>Z22178-2|CAA80154.1| 261|Caenorhabditis elegans Hypothetical
protein F54C8.2 protein.
Length = 261
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 176 ETKQVEKVYSGDGASLSAPGSKRSALSASDAECF-SLCL 289
E + V DG+SL + SKR+ L+ +D + + LCL
Sbjct: 220 EASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCL 258
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 349 PPGGAEP*AGTSGPPQRPGAQAQ 281
PPG A P G GPP PGA +
Sbjct: 184 PPGEAGP-KGPPGPPGSPGAPGE 205
>U29377-3|AAA68720.2| 472|Caenorhabditis elegans Hypothetical
protein K05F1.5 protein.
Length = 472
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 239 CCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 144
CC S P+ + SRP + HFHC I
Sbjct: 97 CCPITS-LPKRLDSCSRPFCKLKKKAHFHCKI 127
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 318 HQDHHRGPAPRHSEKHSASEADRAE 244
H H R + HS KH+AS +D E
Sbjct: 19 HAYHSRPKSEEHSPKHAASSSDLFE 43
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 349 PPGGAEP*AGTSGPPQRPGA 290
PP G+ P AG+ PP P A
Sbjct: 242 PPKGSPPLAGSGSPPPPPAA 261
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 349 PPGGAEP*AGTSGPPQRPGA 290
PP G+ P AG+ PP P A
Sbjct: 263 PPKGSPPLAGSGSPPPPPAA 282
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 349 PPGGAEP*AGTSGPPQRPGA 290
PP G+ P AG+ PP P A
Sbjct: 248 PPKGSPPLAGSGSPPPPPAA 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,869,356
Number of Sequences: 27780
Number of extensions: 183151
Number of successful extensions: 1095
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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