Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5741
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   5.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 5/13 (38%), Positives = 11/13 (84%)
 Frame = +2

Query: 146 YYNGNGVDSVETK 184
           Y NG+G++S++ +
Sbjct: 824 YVNGSGIESIQNR 836


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 29  RPNGLRRNFSPKLFSRLNYVSPSMTMLIQQLNCS 130
           R N LRR       +  N  SPS +M + Q   S
Sbjct: 85  RTNTLRRGSDGSQLAMRNDRSPSYSMQVPQQGAS 118


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +2

Query: 29  RPNGLRRNFSPKLFSRLNYVSPSMTMLIQQLNCS 130
           R N LRR       +  N  SPS +M + Q   S
Sbjct: 533 RTNTLRRGSDGSQLAMRNDRSPSYSMQVPQQGAS 566


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = -3

Query: 321 GHQDHHRGPAPRHSEKHSAS 262
           GH   H    P H   H+A+
Sbjct: 420 GHGHSHIHATPHHHHSHAAT 439


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,879
Number of Sequences: 438
Number of extensions: 2378
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)