Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5738
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81563-3|CAB04565.1|  222|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z81563-3|CAB04565.1|  222|Caenorhabditis elegans Hypothetical
           protein K04H8.3 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 207 LLSQKFDHRVKKFVCKDHFYLTCSIKHIYL*CELSMYSTV 326
           +  Q+ + R   F+C  HF+L C +      C    Y  V
Sbjct: 105 ITEQQLNLRYYNFICSSHFHLDCKLTETLQICMTDRYVAV 144


>U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical
           protein T23B3.4 protein.
          Length = 395

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 490 IVIYIMCCKNFS---TPLFLFDVDKGTFQCNLRQLKVFDWI 603
           I I ++ C +FS   T LFL+D + G F C+  +  + D+I
Sbjct: 107 ITISLVWCFSFSANLTSLFLYDANPGKFTCDSTKGPLVDFI 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,908
Number of Sequences: 27780
Number of extensions: 354175
Number of successful extensions: 662
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)