Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5736
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    33   0.046
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    27   2.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.3  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 32.7 bits (71), Expect = 0.046
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +2

Query: 308  NS*VSV-LQYNACPIPQKRNKFANYNFCVF---DLYSTMFHPSSW*YFVNIY*VPMYFNS 475
            NS +SV L+  +CP+P    K   +++C F   + + T+    +W Y    Y   M++NS
Sbjct: 993  NSRISVFLESFSCPVPGLEEKIIMWSYCKFCKKNTHITVMSEETWKYSFGKYLEFMFYNS 1052

Query: 476  NI 481
             I
Sbjct: 1053 QI 1054


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 579 PYPK*FPSLISK*KPQVNL 523
           P PK FP L SK  PQ+NL
Sbjct: 56  PAPKLFPKLTSKPNPQLNL 74


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 121 RKIIICVITGGKTYL*ARTGRY 56
           +K+++C+I+ G+T +  RT  Y
Sbjct: 233 KKVVVCIISDGRTKIHPRTLAY 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,004
Number of Sequences: 5004
Number of extensions: 60783
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)