Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5736
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174     29   2.4  
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434...    27   9.6  

>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
          Length = 514

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 431 TTMKGGTSWNTNQTRKNYN-LRIYCVSEELGKRCTVK 324
           T ++ G  W  +  RKN +  +++CVS  + K CTV+
Sbjct: 304 TILRRGPEWFASFGRKNNSGTKLFCVSGHVNKPCTVE 340


>07_01_0584 +
           4345134-4345237,4346165-4346267,4346397-4346466,
           4346552-4346590,4346684-4346801,4346894-4346951,
           4347031-4347095,4347281-4347341,4347678-4347779,
           4348005-4348070,4348399-4348443,4348540-4348797,
           4349289-4349501,4350103-4350411,4350461-4350613
          Length = 587

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 378 IIFACLICIPRCSTLHRGSIS 440
           IIF+CL+ +PRC   +R  I+
Sbjct: 547 IIFSCLLALPRCQETNRKIIA 567


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,348
Number of Sequences: 37544
Number of extensions: 349472
Number of successful extensions: 735
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)