Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5735
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    71   1e-13
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    29   0.76 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   1.8  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.1  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
 Frame = +3

Query: 225 QIGGEKNGGTRTV-PL-KRRKSFYPT-QEKI--RASSGGRPFSKHVRRIRPNLKIGTVCI 389
           ++ G KNGG R V P  +    +YP  +E +  +A    RP      ++R +L  GTVCI
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRP-----TKLRASLAPGTVCI 59

Query: 390 LLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGT 527
           LLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI T
Sbjct: 60  LLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIAT 104


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 433 PTSTTLLPACLPAXRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 299
           P S+ + P  LP+ R +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
 Frame = +2

Query: 380 CLHSXRW*TCRQ-EGCTCWNS-----AQRSAFSYWTFCFQFVPATPYSSALCDRHLPPEF 541
           C+   RW TC Q     C+ +     A+R+ F Y  +       +      CD+H PP++
Sbjct: 308 CICKLRWGTCVQCSDKNCYAAYHITCARRAGFFYKIYSHSASYDSVDMETYCDKHTPPDY 367


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 74  STKKPRNYDLGNGVMRFSKSKMF 142
           +TK PRN+ L N ++RFS   +F
Sbjct: 289 NTKGPRNFVLENHLVRFSSLYIF 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,067
Number of Sequences: 5004
Number of extensions: 50560
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)