Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5734
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual 80 3e-16
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 30 0.30
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch... 30 0.40
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 29 0.53
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 2.8
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 27 3.8
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 6.6
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 26 6.6
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 6.6
>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 304
Score = 80.2 bits (189), Expect = 3e-16
Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 3/126 (2%)
Frame = +3
Query: 96 KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLKTF 275
K+F EKIL ++T K + GK +++ VAL+L EK AF N + + + K
Sbjct: 13 KEFKFEKILKDDTKSKIITLYGKIRNE--VALLLLEKTAFDLNTIKLDQLATFLQDTKLV 70
Query: 276 FENDIYGNFEC--FPP-STINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLP 446
ND++ F F ST+ VK+T+I+PA++ H+ K+S Q+ +V ETPE+Y K+T P
Sbjct: 71 ENNDVFHWFLSTNFQDCSTLPSVKSTLIWPASETHVRKYSSQKKRMVCETPEMYLKVTKP 130
Query: 447 HLEKEQ 464
+E ++
Sbjct: 131 FIETQR 136
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 285 DIYGNFECFPPSTINGVKTTIIYPATDKHIAKFS 386
D+Y ++ S INGV ++IYPA + I+K S
Sbjct: 34 DVYRSYISSELSKINGVDVSLIYPALETSISKDS 67
>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 102 FVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLK 269
FVLE+ L N KT G+ K+GV L+ K + N S E ++ K +K
Sbjct: 433 FVLERHLKKNQAIKTGKSCGRINTKNGVELVYPRK--YVSNGFSAEHWYRKGRIIK 486
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 220 SLKAFFSNRISATPLLSLNFPTTQAVFLLVLLFNIFS 110
S+K FF A+PL ++NFP A+F+ N+FS
Sbjct: 268 SMKKFFRFLCLASPLFTMNFP--MAIFMYWFPSNVFS 302
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 27.1 bits (57), Expect = 2.8
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +1
Query: 418 QSYIKN*HCLISRKNSSIYRYDF 486
++Y++N C++ KN ++ YDF
Sbjct: 85 EAYLRNQDCIVHAKNDLLFVYDF 107
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 312 PPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTL-PHLEKEQFNL 473
PPS +N +T + + + + K++++++ + PE + L L P+ E + F +
Sbjct: 725 PPSQVNFSETLVNFSQPPRVLLKYNEKKLSLDSSAPENWISLCLQPYGESKDFEV 779
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -2
Query: 238 SSLRSFSLKA-FFSNRISATPLLSLNFPTTQAVF 140
S L++++++ FFSN S+ L +FPT ++ F
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAF 166
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 251 QRNSAENVFRERYLRKLRVFPAFDYKR 331
+R SA + R+R++RK+RV D +R
Sbjct: 156 ERRSAMDGLRDRHIRKVRVSQLLDLQR 182
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 111 PKQSLSILTDCHLDCCRFHC 52
P LS+L D + CC ++C
Sbjct: 139 PNTLLSLLNDEEISCCEYYC 158
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 338 FHTVYSRRRETLEVSVNIVLEKRFQLSFFGEI 243
FH + ++RET+ V+ N + + FFGEI
Sbjct: 704 FHQQWDKQRETISVAENDLRICQKARKFFGEI 735
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,295
Number of Sequences: 5004
Number of extensions: 57571
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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