Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5734
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY079166-1|AAL86013.1|  311|Caenorhabditis elegans heat shock-li...    76   3e-14
AL132858-5|CAB60481.1|  311|Caenorhabditis elegans Hypothetical ...    76   3e-14
Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70267-2|CAA94213.1|  525|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine re...    29   3.5  
U58758-1|AAB93429.2|  819|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>AY079166-1|AAL86013.1|  311|Caenorhabditis elegans heat shock-like
           protein protein.
          Length = 311

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 42/126 (33%), Positives = 71/126 (56%)
 Frame = +3

Query: 96  KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLKTF 275
           +D   ++IL  +++ K+  V+    D S   ++L  K+ F E     E   +   QL+  
Sbjct: 24  QDAKFQEILGADSSHKSLFVLLSHPDGSQ-GILLANKSPFSEEKSDIEKLLAT-AQLQEI 81

Query: 276 FENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLPHLE 455
             NDI+G++       +N +K+ +IYP  D+ IAK+ Q+E  ++ ETPELY+ +T P++E
Sbjct: 82  SRNDIFGSYNIEIDPKLNLLKSQLIYPINDRLIAKYRQEEKFVIRETPELYETVTRPYIE 141

Query: 456 KEQFNL 473
           K Q NL
Sbjct: 142 KYQLNL 147


>AL132858-5|CAB60481.1|  311|Caenorhabditis elegans Hypothetical
           protein Y113G7A.9 protein.
          Length = 311

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 42/126 (33%), Positives = 71/126 (56%)
 Frame = +3

Query: 96  KDFVLEKILNNNTNRKTACVVGKFKDKSGVALILFEKNAFKENDLSEEGYFSKETQLKTF 275
           +D   ++IL  +++ K+  V+    D S   ++L  K+ F E     E   +   QL+  
Sbjct: 24  QDAKFQEILGADSSHKSLFVLLSHPDGSQ-GILLANKSPFSEEKSDIEKLLAT-AQLQEI 81

Query: 276 FENDIYGNFECFPPSTINGVKTTIIYPATDKHIAKFSQQEVHIVLETPELYKKLTLPHLE 455
             NDI+G++       +N +K+ +IYP  D+ IAK+ Q+E  ++ ETPELY+ +T P++E
Sbjct: 82  SRNDIFGSYNIEIDPKLNLLKSQLIYPINDRLIAKYRQEEKFVIRETPELYETVTRPYIE 141

Query: 456 KEQFNL 473
           K Q NL
Sbjct: 142 KYQLNL 147


>Z70267-3|CAA94214.1|  534|Caenorhabditis elegans Hypothetical
           protein K04C1.2b protein.
          Length = 534

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = +3

Query: 183 VALILFEKNAFKENDLSEEGYFSKETQLKTFFENDIYGNFECFPP--STINGVKTTIIYP 356
           VA +L +       DLS++GY S E+       N +  N E   P    +N     I   
Sbjct: 298 VAKVLPDHEGSSSQDLSDDGYSSPESSSMQLGRNSMTSNEETSHPVQQEMNKTDMVIADV 357

Query: 357 ATDKHIAKFSQQEVHIVLETPELYKK 434
            +   + + SQ  +H   + PE  ++
Sbjct: 358 ISQNRVHQPSQGPLHQEADAPEANRR 383


>Z70267-2|CAA94213.1|  525|Caenorhabditis elegans Hypothetical
           protein K04C1.2a protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
 Frame = +3

Query: 183 VALILFEKNAFKENDLSEEGYFSKETQLKTFFENDIYGNFECFPP--STINGVKTTIIYP 356
           VA +L +       DLS++GY S E+       N +  N E   P    +N     I   
Sbjct: 289 VAKVLPDHEGSSSQDLSDDGYSSPESSSMQLGRNSMTSNEETSHPVQQEMNKTDMVIADV 348

Query: 357 ATDKHIAKFSQQEVHIVLETPELYKK 434
            +   + + SQ  +H   + PE  ++
Sbjct: 349 ISQNRVHQPSQGPLHQEADAPEANRR 374


>AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 31 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -1

Query: 515 LISLFKELLSKSYL*IELFFLEMRQCQFFI*L---WSFQHNMNFLLAKFGNMLISGWVDY 345
           + SL    L+K++   + +FL++  CQFF  +   W+F        +   +  +SGW D 
Sbjct: 19  IYSLTVVFLTKNWKHFDNYFLKLYICQFFFNMWMYWNFYITSRLPASTCKDCYLSGWFDS 78

Query: 344 CS 339
            S
Sbjct: 79  LS 80


>U58758-1|AAB93429.2|  819|Caenorhabditis elegans Hypothetical
           protein ZK1127.7 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = +3

Query: 192 ILFEKNAFKENDLSEEGYFSKETQ---LKTFFENDIYGNFECFP-PSTINGVK 338
           ++ +KN  K+  L+EE  ++KET+   LK FF  +I  ++     P  ++G+K
Sbjct: 279 LMQDKNQRKQQGLAEECLYNKETRFVTLKDFFNYEIVCSWNLHSIPCLVDGLK 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,194,570
Number of Sequences: 27780
Number of extensions: 315895
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)