Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5733
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0386 + 3424561-3425346                                           30   1.7  
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610           29   4.0  
07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672     29   5.3  

>08_01_0386 + 3424561-3425346
          Length = 261

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 193 YLIVDSLRGYSNFARTGR*AHGLNLRELLNTSP 95
           +++V  LR +S FARTG  A GLNL   + + P
Sbjct: 50  HIVVVLLRSWSEFARTGTFAGGLNLDRSVLSRP 82


>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
          Length = 439

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +2

Query: 206 FYSIVVTLSGILSFLGPN*SAPYNFVTGADSPLNTGWTDKLSDHL 340
           FY      S  LSF  P  S P+ FV   D    TGWT+    H+
Sbjct: 128 FYRCSNDTSRELSFRTPPASLPFKFVVAGDLG-QTGWTESTLRHI 171


>07_03_1459 + 26681619-26682419,26682600-26682912,26683861-26684672
          Length = 641

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 643 VKGTVFSRDKEL--LVTLLSINYKSVSRTVGNVKARTSK 753
           +KG +F+ D  L   +TLLS+  +S +R VG  KAR +K
Sbjct: 60  LKGGIFADDMGLGKTLTLLSLIGRSKARNVGGKKARGAK 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,203
Number of Sequences: 37544
Number of extensions: 326129
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)