Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5731
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048...    28   9.0  
04_03_0596 - 17775203-17775247,17775772-17775830,17776093-17776609     28   9.0  

>08_02_0767 +
           21004373-21004545,21004656-21004711,21004800-21004882,
           21004942-21005112,21005806-21005997
          Length = 224

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 133 RHLYSHRRPCQRPLHC 86
           R L+  R PC RP+HC
Sbjct: 58  RRLWQQRPPCLRPIHC 73


>04_03_0596 - 17775203-17775247,17775772-17775830,17776093-17776609
          Length = 206

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 550 LQLGTRGADSAPT*NGCNSNLNDKCN*LSEIEY*FSIFLRCFK 678
           L + T GA +APT  GCN++    C  L+  EY F I   CF+
Sbjct: 17  LPMPTGGAPTAPTLAGCNTS----CGNLT-FEYPFGIGQGCFR 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,537,986
Number of Sequences: 37544
Number of extensions: 179975
Number of successful extensions: 418
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)