Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5729
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81101-2|CAC42330.1|  199|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z81101-1|CAB03197.1|  210|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    28   3.3  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    28   3.3  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    28   3.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   4.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   4.4  
AF078157-5|AAN84817.1|  379|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF067940-2|AAC19203.1|  219|Caenorhabditis elegans Hypothetical ...    28   4.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   4.4  
AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical...    27   5.8  
Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guany...    27   7.7  

>Z81101-2|CAC42330.1|  199|Caenorhabditis elegans Hypothetical
           protein K09G1.1b protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -3

Query: 196 ANW*CHYERWLAEVVEVVGLGHMAQNHQDLDLECTEQGVIEMQLLILHLDLVTSY*SLWV 17
           A W  H       +V  + LG++   H  +  E T +G+I ++L+   ++ +  + S+W+
Sbjct: 82  AAWTEHISFETLLIVSALLLGYVVFPHLTIKDEATREGLIVVELIFYGVNTLLYFISIWL 141

Query: 16  L 14
           +
Sbjct: 142 M 142


>Z81101-1|CAB03197.1|  210|Caenorhabditis elegans Hypothetical
           protein K09G1.1a protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -3

Query: 196 ANW*CHYERWLAEVVEVVGLGHMAQNHQDLDLECTEQGVIEMQLLILHLDLVTSY*SLWV 17
           A W  H       +V  + LG++   H  +  E T +G+I ++L+   ++ +  + S+W+
Sbjct: 93  AAWTEHISFETLLIVSALLLGYVVFPHLTIKDEATREGLIVVELIFYGVNTLLYFISIWL 152

Query: 16  L 14
           +
Sbjct: 153 M 153


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   ETPPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPN 111
           E+   AP S + +   P+  L ++S + P+P TP PN
Sbjct: 847 ESADDAPHSPSDTTSVPSPPLHSSSIVAPIPITPQPN 883


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   ETPPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPN 111
           E+   AP S + +   P+  L ++S + P+P TP PN
Sbjct: 869 ESADDAPHSPSDTTSVPSPPLHSSSIVAPIPITPQPN 905


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 13  IAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPGGFVPY 132
           +APTS  + LP P++    +    P P  P P P    PY
Sbjct: 280 VAPTSSRAPLP-PSSSFAPSISASPAPAPPPPPPQAASPY 318


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 13  IAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPGGFVPY 132
           +APTS  + LP P++    +    P P  P P P    PY
Sbjct: 282 VAPTSSRAPLP-PSSSFAPSISASPAPAPPPPPPQAASPY 320


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 1   ETPPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPN 111
           E+   AP S + +   P+  L ++S + P+P TP PN
Sbjct: 869 ESADDAPHSPSDTTSVPSPPLHSSSIVAPIPITPQPN 905


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 7   PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPG 117
           PP  PT  N S P  +A    +S LPP+   P P PG
Sbjct: 686 PP--PTKMNLSAPSTSA--GGSSALPPITGGPPPPPG 718


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 7   PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPG 117
           PP  PT  N S P  +A    +S LPP+   P P PG
Sbjct: 686 PP--PTKMNLSAPSTSA--GGSSALPPITGGPPPPPG 718


>AF078157-5|AAN84817.1|  379|Caenorhabditis elegans Hypothetical
           protein F25E5.7 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 40  LPDPNAVLRAASQLPPVPYTP 102
           +PDP  +   +S LPP PY P
Sbjct: 298 VPDPERIDPTSSALPPTPYEP 318


>AF067940-2|AAC19203.1|  219|Caenorhabditis elegans Hypothetical
           protein F36F12.4 protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = +1

Query: 190 NLPTLTPDQIGKAQKYCKWASSALNYDDVKTAIYNLKSALELLQTGRDPA*DPMDNKSIC 369
           NLP + P Q G A++  K  +S   + +++  I NL+ AL+   T R    +   +KSI 
Sbjct: 82  NLPQIWPSQNGLARRIQKTENSPQKFTNLQDTIENLE-ALKFRNTTRTQIWE--SSKSIY 138

Query: 370 DIGQVIIKSY 399
               V +++Y
Sbjct: 139 RPEMVAVQTY 148


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 7   PPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPNPG 117
           PP  PT  N S P  +A    +S LPP+   P P PG
Sbjct: 269 PP--PTKMNLSAPSTSA--GGSSALPPITGGPPPPPG 301


>AL110484-17|CAB54408.1|  586|Caenorhabditis elegans Hypothetical
           protein Y38E10A.17 protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = -2

Query: 137 GSYGTKPPGFGSGVYGTGGN*DA---ALNTAFGSGNELLKLVG 18
           GS G    G GSG YG GG   A   A N ++GS    +K VG
Sbjct: 464 GSGGYGAGGGGSGGYGAGGAGGARNSASNGSYGSSANEVKSVG 506


>Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 175 HSDTTNLPTLTPDQIGKA 228
           H D T+LP+ TP +IG A
Sbjct: 833 HEDRTSLPSATPSEIGDA 850


>Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 175 HSDTTNLPTLTPDQIGKA 228
           H D T+LP+ TP +IG A
Sbjct: 833 HEDRTSLPSATPSEIGDA 850


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 1   ETPPIAPTSFNSSLPDPNAVLRAASQLPPVPYTPDPN---PGGFVPYD 135
           E  P+   S  S+  + +  +  +S  PP+P TP PN   P   +PY+
Sbjct: 472 EGAPVWTPSAVSTASELSPPIPMSSPPPPLPRTPQPNNGLPNASLPYN 519


>AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guanylyl
           cyclase GCY-33 protein.
          Length = 945

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 175 HSDTTNLPTLTPDQIGKA 228
           H D T+LP+ TP +IG A
Sbjct: 833 HEDRTSLPSATPSEIGDA 850


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,161
Number of Sequences: 27780
Number of extensions: 221991
Number of successful extensions: 699
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)