Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5728
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   4.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   6.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   6.2  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   8.2  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/52 (26%), Positives = 31/52 (59%)
 Frame = +2

Query: 278  GSRNDFGIIPTEIADILEASSEHLYRIYLSIMANTLALKKTKNITDCLIYRD 433
            G++N   ++ T +++ L+ +  H + + L+I+ N   LKK  +  + L+Y+D
Sbjct: 1597 GNKNCNEMLLTYLSNALDENYLH-WNVKLAILKNAPHLKKIMSNEEFLLYKD 1647


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 302  IPTEIADILEASSEHLYRIY 361
            +PTEIAD+L+A  + +  +Y
Sbjct: 1480 LPTEIADVLDAHDQRVLDLY 1499


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 343 LRACFQYISNFSWNNTKIISRPEIHTNLGLALQ 245
           LRA F Y+SN  W +        +   LG+AL+
Sbjct: 625 LRAIFAYVSNSDWRDVLDEVSLSLKDRLGIALR 657


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 357 ILYRCSELASNISAISVGIIPKSFL 283
           +L+RC    S+I   SVG+I   FL
Sbjct: 272 VLFRCQNQTSSIDVWSVGVILLCFL 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,229
Number of Sequences: 5004
Number of extensions: 65033
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)