Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5728
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0476 - 3896314-3898725                                           29   2.8  
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558...    29   3.7  
05_01_0478 - 3910575-3912989                                           29   4.9  
03_06_0531 + 34552206-34552598,34552665-34552735,34553363-345533...    29   4.9  
11_01_0605 + 4821363-4823246                                           28   6.4  
06_03_0470 - 21113186-21114183,21114273-21115824                       28   8.5  

>05_01_0476 - 3896314-3898725
          Length = 803

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 488 NSMEIALHTRLKVLTSDTKKRKNKKIIVGVTGSIVIAVLAAFFVQSLKETLI 643
           NS E  L+ RL      + ++ N+K IVGV   I+   +A+F V  +   LI
Sbjct: 435 NSSEEVLYLRLSAKDVPSSRKNNRKTIVGV---IIATCIASFLVMLMLILLI 483


>09_04_0151 -
           15154063-15154296,15155616-15155660,15155749-15155820,
           15155932-15156024,15156282-15156351,15156716-15156912,
           15156946-15157215,15158620-15158757,15158841-15158930,
           15159041-15159247,15159987-15160154,15160300-15160503,
           15160584-15160670,15160748-15160861,15161689-15161835,
           15161914-15162063,15162211-15162276,15162376-15162480,
           15162625-15162798,15162930-15163154,15163534-15163590,
           15163858-15164019,15164234-15164302,15164391-15164471,
           15164823-15164925,15165011-15165156,15165285-15165359,
           15165441-15165508,15165586-15165667,15165745-15165858,
           15166358-15166476,15166692-15166781,15166862-15166988
          Length = 1382

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 278 GSRNDFGIIPTEIADILEASSEHLYRIYLSIMA 376
           GS N+ GIIP  + D+     EHL R +L  M+
Sbjct: 91  GSGNEPGIIPLAVHDLFRTIEEHLDREFLLRMS 123


>05_01_0478 - 3910575-3912989
          Length = 804

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 488 NSMEIALHTRLKVLTSDTKKRKNKKIIVGVTGSIVIAVLAAFFVQSLKETLINK 649
           NS E  L+ RL      + ++ N+K IVGV   I  A +  F V  +   LI K
Sbjct: 435 NSSEDVLYLRLSTKDVPSSRKNNRKTIVGV---IAAACIVCFLVMLMLILLILK 485


>03_06_0531 +
           34552206-34552598,34552665-34552735,34553363-34553369,
           34553603-34553736,34553834-34554245,34554655-34554753,
           34555059-34555283,34555652-34556029,34556412-34556555,
           34556832-34556927,34557228-34557547,34557965-34558040
          Length = 784

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 272 DFGSRNDFGIIPTEIADILEASSEHL 349
           D G R DF I P  I D+LE+S+EH+
Sbjct: 494 DVGCRFDF-ISPPAIEDVLESSAEHV 518


>11_01_0605 + 4821363-4823246
          Length = 627

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 254 QAQVCMDFGSRNDFGIIPTEIADILEASSEHLYRIYLS 367
           Q+ + +D G+    GIIPT I   L+     L + YLS
Sbjct: 487 QSLITIDLGNNELIGIIPTNIGTFLKLERLDLSKNYLS 524


>06_03_0470 - 21113186-21114183,21114273-21115824
          Length = 849

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -2

Query: 627 KDCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSL-VCNAISIEFKIVVSSLN 463
           K+CT   A  A T+L V  +  F+FL  L++D+  ++   C A+    + VV++++
Sbjct: 548 KECTGVEAIGAQTMLEVFQSFEFVFLLHLMNDIFGYTADFCQALQKREQDVVNAMD 603


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,032,144
Number of Sequences: 37544
Number of extensions: 355971
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)