Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5728
(718 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical ... 30 1.4
AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein. 30 1.9
AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein. 30 1.9
AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte ... 30 1.9
AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte ... 30 1.9
AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte ... 30 1.9
Z22179-2|CAA80168.1| 159|Caenorhabditis elegans Hypothetical pr... 28 5.8
>AL132859-3|CAB60491.1| 346|Caenorhabditis elegans Hypothetical
protein Y39C12A.6 protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 462 TACAIFEAY*SRYIKQSVIFLVF-FKANVLAIILKYILYRCSE 337
TACA+F Y S + + ++F+VF +L I+ Y++ + +E
Sbjct: 236 TACALFIQYDSSPLHREIMFVVFDLSFTLLCILAPYLILKTNE 278
>AF482952-1|AAL89754.1| 668|Caenorhabditis elegans CUP-5L protein.
Length = 668
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -2
Query: 642 IKVSFKDCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLN 463
+++ D +N K IT+ + ++ +V+D ISIEF+ +SL
Sbjct: 359 LQIKTSDYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLF 418
Query: 462 TACAIFEAY*SRYIKQSVI--FLVFFKANVLAIILK 361
T +IF + + V+ F F + N+L + LK
Sbjct: 419 TLTSIFLGMGALLVYVGVLRYFGFFSQYNILMLTLK 454
>AF338583-1|AAK19624.1| 611|Caenorhabditis elegans CUP-5 protein.
Length = 611
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -2
Query: 642 IKVSFKDCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLN 463
+++ D +N K IT+ + ++ +V+D ISIEF+ +SL
Sbjct: 359 LQIKTSDYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLF 418
Query: 462 TACAIFEAY*SRYIKQSVI--FLVFFKANVLAIILK 361
T +IF + + V+ F F + N+L + LK
Sbjct: 419 TLTSIFLGMGALLVYVGVLRYFGFFSQYNILMLTLK 454
>AC006679-12|AAM15596.1| 611|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform a protein.
Length = 611
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -2
Query: 642 IKVSFKDCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLN 463
+++ D +N K IT+ + ++ +V+D ISIEF+ +SL
Sbjct: 359 LQIKTSDYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLF 418
Query: 462 TACAIFEAY*SRYIKQSVI--FLVFFKANVLAIILK 361
T +IF + + V+ F F + N+L + LK
Sbjct: 419 TLTSIFLGMGALLVYVGVLRYFGFFSQYNILMLTLK 454
>AC006679-11|AAP82643.1| 668|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform d protein.
Length = 668
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -2
Query: 642 IKVSFKDCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLN 463
+++ D +N K IT+ + ++ +V+D ISIEF+ +SL
Sbjct: 359 LQIKTSDYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLF 418
Query: 462 TACAIFEAY*SRYIKQSVI--FLVFFKANVLAIILK 361
T +IF + + V+ F F + N+L + LK
Sbjct: 419 TLTSIFLGMGALLVYVGVLRYFGFFSQYNILMLTLK 454
>AC006679-10|AAP82642.1| 619|Caenorhabditis elegans Coelomocyte
uptake defective protein5, isoform c protein.
Length = 619
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = -2
Query: 642 IKVSFKDCTKNAAKTAITILPVTPTMIFLFLRFLVSDVSTFSLVCNAISIEFKIVVSSLN 463
+++ D +N K IT+ + ++ +V+D ISIEF+ +SL
Sbjct: 367 LQIKTSDYFENVLKNKITVTDQLDFLNLWYVMIVVNDALIIIGTVAKISIEFQDFDNSLF 426
Query: 462 TACAIFEAY*SRYIKQSVI--FLVFFKANVLAIILK 361
T +IF + + V+ F F + N+L + LK
Sbjct: 427 TLTSIFLGMGALLVYVGVLRYFGFFSQYNILMLTLK 462
>Z22179-2|CAA80168.1| 159|Caenorhabditis elegans Hypothetical
protein F58A4.2 protein.
Length = 159
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +2
Query: 506 LHTRLKVLTSDTKKRKNKKIIVGVTGSIVIAVLAAFFVQSLKETLINKYVTY*PTLS 676
L + L ++TS K++K K+ G+TG A ++FF ++ +++N PT+S
Sbjct: 2 LKSLLSLVTSGNKEKKKKRSSAGLTGHAPPAADSSFFSEA-DSSIMNVTSITLPTVS 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,584,190
Number of Sequences: 27780
Number of extensions: 353264
Number of successful extensions: 887
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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