Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5727
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   2.1  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    24   6.5  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    24   6.5  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    24   6.5  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    24   6.5  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    23   8.6  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    23   8.6  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    23   8.6  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    23   8.6  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 15  VNYYGGPQVERVMLSARHNDFSIHSTIYR 101
           V+Y GGP+   V+LS   N  +   T+ R
Sbjct: 77  VDYVGGPEYAHVLLSPLENLAATEETVVR 105


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 132 LFGVYKIRMASAYLQHVLYTRTKEESVVT 218
           L+ +   R A  YL+H+L T T    + T
Sbjct: 237 LYKLVTSRQAIKYLEHILRTNTNGSKIFT 265


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 24  YGGPQVERVMLSARHND 74
           Y GP +   +LSAR ND
Sbjct: 282 YSGPMIRGKLLSARSND 298


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 136 LVYTKFEWHRHTYNMCYIRE 195
           L YTKFEWH   +  C++ E
Sbjct: 643 LDYTKFEWH---FVSCHLAE 659


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
 Frame = -1

Query: 162 MPFEFCIHQKDDQN----TGRIFTN 100
           +PFEF   +KDD+N     GR F N
Sbjct: 613 VPFEFTHKRKDDENLLKDLGRTFQN 637


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 315 YRANWVPGPPSSFFLFHVF 259
           Y A W  GP S   +FH F
Sbjct: 76  YNAKWQTGPLSCVSVFHKF 94


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 213 RQILLLFSYIAHVVSMPMPFEFCIHQKDD 127
           RQ+  L + +      P+P+ F +H +D+
Sbjct: 56  RQLEALLNQLLENSDDPVPYNFALHHEDE 84


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 68  Q*LLNSFNDLSFVNIRPVF*SSFWCIQNSNGIGILTTC 181
           Q +L+    LS +    V    F C+ N NG+  +T C
Sbjct: 120 QYMLDCCRSLSDIEKDGVTLEEFSCLANCNGLRTITKC 157


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 79  QFIQRFIVCKYPAGVLIIFLVYTKFEWHRHTYNMCYIR 192
           +F + F V  +   VLIIFL+     W  H   + Y++
Sbjct: 209 KFFEWFFVLHHTCSVLIIFLI-----WLHHPRTIVYMK 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,193
Number of Sequences: 5004
Number of extensions: 21797
Number of successful extensions: 51
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)