Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5727
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190...    27   2.6  
10_06_0140 + 11147019-11147791,11148301-11150524                       26   7.8  
07_01_0307 - 2194796-2199274                                           26   7.8  
04_04_0515 - 25829298-25829750,25829822-25829944,25831294-258314...    26   7.8  

>02_01_0284 +
           1907249-1907665,1907816-1907859,1909508-1909546,
           1909791-1910112,1910803-1910892,1911541-1911609,
           1911969-1912074,1912146-1912234,1912349-1912461,
           1912555-1912657
          Length = 463

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 31  GRRLNALC*ARVTMTSQFIQRFIVCKYPA 117
           GR  N +C +      Q IQR ++C +PA
Sbjct: 170 GREYNLICPSEALSEKQRIQRRVLCYFPA 198


>10_06_0140 + 11147019-11147791,11148301-11150524
          Length = 998

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 120 CFDHLFGVYKIRMASAYLQHVLYTRTKEESVVTM 221
           C  HLFGV+KI+ A   ++ +    T++  + T+
Sbjct: 623 CLIHLFGVFKIQDADQQMRKLKSFLTEKSKLETL 656


>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 208 DSSFVLVYSTCCKYADAIRILYTPK 134
           D SF+  +    K A A+R+LY PK
Sbjct: 659 DKSFIGCFHDLFKEASALRVLYFPK 683


>04_04_0515 -
           25829298-25829750,25829822-25829944,25831294-25831473,
           25831687-25831784,25831914-25832007,25832090-25832149,
           25832350-25832434,25832513-25832562
          Length = 380

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 70  MTSQFIQRFIVCKYPAGVLIIFLVYTKFEWHRH 168
           M   F+ +F    YP  V   +L YTKF   +H
Sbjct: 1   MIDSFLNKFFPSGYPYSVNEGYLTYTKFRALQH 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,988,176
Number of Sequences: 37544
Number of extensions: 131967
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)