Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5727
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine re...    27   2.3  
AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine re...    27   2.3  
U00058-1|AAL02529.2|  241|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z72503-9|CAA96599.2|  370|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AL032659-1|CAA21750.1|  298|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical ...    25   9.5  

>AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein305 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 294 GPPSSFFLFHVFYYFTCFSIKLCISW*RQILLLFSYIAHV-VSMPM 160
           G  + FFLFH  Y+ TC          +++  +F  I  V +S+P+
Sbjct: 216 GVQTFFFLFHTIYHLTCVGSATVSESAKKLQRMFLKIVSVQISIPL 261


>AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein57 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 294 GPPSSFFLFHVFYYFTCFSIKLCISW*RQILLLFSYIAHV-VSMPM 160
           G  + FFLFH  Y+ TC          +++  +F  I  V +S+P+
Sbjct: 216 GVQTFFFLFHTIYHLTCVGSATVSESAKKLQRMFLKIVSVQISIPL 261


>U00058-1|AAL02529.2|  241|Caenorhabditis elegans Hypothetical
           protein W03A5.2 protein.
          Length = 241

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 312 RANWVPGPPSSFFLFHVFYYFTCF 241
           +ANWVP P   +      Y + C+
Sbjct: 159 QANWVPDPSKQYLAIDAIYEWCCY 182


>Z35600-4|CAB54236.1|  137|Caenorhabditis elegans Hypothetical
           protein F37A8.5 protein.
          Length = 137

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 6   NGVVNYYGGPQVERVMLSARHNDFSIHSTIYRL*ISGRCFDHLF 137
           N VVN   GP  ERV+L+  H    I+  I +  + G  ++H F
Sbjct: 65  NAVVNVGCGPAEERVLLTGLHAVADIYCEICKTTL-GWKYEHAF 107


>Z72503-9|CAA96599.2|  370|Caenorhabditis elegans Hypothetical
           protein C26C6.7 protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 18  NYYGGPQVERVMLSARHNDFSIHST 92
           N++  PQ+ +VML AR   F  HST
Sbjct: 33  NFFEEPQI-KVMLDARRESFLRHST 56


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 187 YSTCCKYADAIRILY 143
           Y TCCKYAD     Y
Sbjct: 823 YRTCCKYADHCEFYY 837


>AL032659-1|CAA21750.1|  298|Caenorhabditis elegans Hypothetical
           protein Y71H9A.2 protein.
          Length = 298

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 207 ILLLFSYIAHVVSMPMPFEFCIHQKDDQNTGRIF 106
           IL +FSYI  V+++P+    C+    +     IF
Sbjct: 34  ILTIFSYILAVLTLPISVFLCVKVAQEYERAVIF 67


>AF125965-3|AAD14757.1|  266|Caenorhabditis elegans Hypothetical
           protein H43I07.1 protein.
          Length = 266

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 58  ARVTMTSQFIQRFIVCKYPAGVLIIFLVYTK 150
           A +   S F+Q+ ++  Y  GV   +  YTK
Sbjct: 64  AALEQASDFVQQLVLFSYSVGVFAGYYFYTK 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,018,602
Number of Sequences: 27780
Number of extensions: 128381
Number of successful extensions: 328
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)