Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5727
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   0.70 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   0.70 
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           22   1.6  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   2.1  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 165 AYLQHVLYTRTKEES 209
           AY QH L  R KEES
Sbjct: 113 AYKQHYLQNRVKEES 127


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 165 AYLQHVLYTRTKEES 209
           AY QH L  R KEES
Sbjct: 113 AYKQHYLQNRVKEES 127


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 108 ISGRCFDHLFGVYKIRMASAYLQHVLYTRTKEESVVT 218
           ISG  ++   GV K+ + +     V YT   +   VT
Sbjct: 47  ISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVT 83


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 114 RIFTNDKSLNELRSHCDA 61
           +IF N+  +N+L + C A
Sbjct: 89  KIFLNENEINQLITECSA 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,190
Number of Sequences: 438
Number of extensions: 1655
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)