Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5726
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical p...    27   7.5  
U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 24   KTIKNEIDHRCSSRPCGYRHRCPPY-RGLP*DRSV*IRRQPRWSLQLQFRDFQRHR 188
            K +KN++ +R SSR  G  H+ P + R LP D     R+  R + Q +F+  +  R
Sbjct: 2529 KFLKNKVHNRRSSRAPGIHHQRPLHPRWLPTDHET-DRKDSRAASQFRFQHMRSKR 2583


>Z82084-6|CAJ85781.1|  156|Caenorhabditis elegans Hypothetical
           protein ZK1053.7 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 256 VRGSYSYTNTDGKPETITYF 315
           ++ +YSY N DG P + TY+
Sbjct: 112 IKDTYSYDNVDGTPISCTYY 131


>Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical
           protein F49E12.9a protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 406 KSIQGI*KFSSWRRRPXE*IHPE 338
           KSI+G   + SW  +P + IHPE
Sbjct: 242 KSIEGKRNYMSWSMKPIKQIHPE 264


>U28971-5|AAA68379.1|  982|Caenorhabditis elegans Hypothetical
           protein B0244.6 protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 390 FRSLARGGGDLRNRFTLSMVSSLVSEVRNGFGFAVSVRVTVASS 259
           F SL R    L+   TLS  +S V  VRN  G+++     +A++
Sbjct: 449 FISLVRSSRKLKRSNTLSSSASSVKRVRNRLGWSIIAVCLIAAA 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,979,890
Number of Sequences: 27780
Number of extensions: 230886
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)